Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24700 and RR42_RS24705 are separated by 30 nucleotides RR42_RS24705 and RR42_RS24710 are separated by 108 nucleotides
RR42_RS24700: RR42_RS24700 - glucose-methanol-choline oxidoreductase, at 877,139 to 878,821
_RS24700
RR42_RS24705: RR42_RS24705 - aldehyde dehydrogenase, at 878,852 to 880,273
_RS24705
RR42_RS24710: RR42_RS24710 - alpha/beta hydrolase, at 880,382 to 881,338
_RS24710
Position (kb) 878
879
880
881 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 878.186 kb on - strand, within RR42_RS24700 at 878.220 kb on + strand, within RR42_RS24700 at 878.221 kb on - strand, within RR42_RS24700 at 878.269 kb on - strand, within RR42_RS24700 at 878.346 kb on + strand, within RR42_RS24700 at 878.347 kb on - strand, within RR42_RS24700 at 878.455 kb on - strand, within RR42_RS24700 at 878.462 kb on + strand, within RR42_RS24700 at 878.463 kb on - strand, within RR42_RS24700 at 878.511 kb on + strand, within RR42_RS24700 at 878.512 kb on - strand, within RR42_RS24700 at 878.535 kb on + strand, within RR42_RS24700 at 878.536 kb on - strand, within RR42_RS24700 at 878.536 kb on - strand, within RR42_RS24700 at 878.803 kb on - strand at 878.901 kb on + strand at 878.971 kb on + strand at 879.199 kb on - strand, within RR42_RS24705 at 879.202 kb on - strand, within RR42_RS24705 at 879.414 kb on + strand, within RR42_RS24705 at 879.414 kb on + strand, within RR42_RS24705 at 879.415 kb on - strand, within RR42_RS24705 at 879.510 kb on + strand, within RR42_RS24705 at 879.510 kb on + strand, within RR42_RS24705 at 879.785 kb on + strand, within RR42_RS24705 at 879.786 kb on - strand, within RR42_RS24705 at 879.910 kb on - strand, within RR42_RS24705 at 879.910 kb on - strand, within RR42_RS24705 at 880.284 kb on - strand at 880.475 kb on + strand at 881.049 kb on + strand, within RR42_RS24710 at 881.259 kb on + strand at 881.259 kb on + strand at 881.260 kb on - strand at 881.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 878,186 - RR42_RS24700 0.62 -0.2 878,220 + RR42_RS24700 0.64 -1.9 878,221 - RR42_RS24700 0.64 +0.3 878,269 - RR42_RS24700 0.67 +2.8 878,346 + RR42_RS24700 0.72 +0.1 878,347 - RR42_RS24700 0.72 -0.9 878,455 - RR42_RS24700 0.78 +0.2 878,462 + RR42_RS24700 0.79 -0.4 878,463 - RR42_RS24700 0.79 -0.1 878,511 + RR42_RS24700 0.82 +0.4 878,512 - RR42_RS24700 0.82 -0.5 878,535 + RR42_RS24700 0.83 +0.2 878,536 - RR42_RS24700 0.83 -0.3 878,536 - RR42_RS24700 0.83 +0.2 878,803 - -0.1 878,901 + -0.1 878,971 + -0.2 879,199 - RR42_RS24705 0.24 +0.5 879,202 - RR42_RS24705 0.25 +0.5 879,414 + RR42_RS24705 0.40 +0.1 879,414 + RR42_RS24705 0.40 +0.5 879,415 - RR42_RS24705 0.40 -0.2 879,510 + RR42_RS24705 0.46 +0.7 879,510 + RR42_RS24705 0.46 -0.8 879,785 + RR42_RS24705 0.66 +1.7 879,786 - RR42_RS24705 0.66 -0.3 879,910 - RR42_RS24705 0.74 +0.7 879,910 - RR42_RS24705 0.74 -0.3 880,284 - -0.3 880,475 + -0.2 881,049 + RR42_RS24710 0.70 -1.3 881,259 + +0.6 881,259 + -0.1 881,260 - +0.4 881,260 - +0.2
Or see this region's nucleotide sequence