Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24065

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24060 and RR42_RS24065 are separated by 53 nucleotidesRR42_RS24065 and RR42_RS24070 are separated by 24 nucleotides RR42_RS24060: RR42_RS24060 - hypothetical protein, at 722,584 to 723,537 _RS24060 RR42_RS24065: RR42_RS24065 - hypothetical protein, at 723,591 to 725,030 _RS24065 RR42_RS24070: RR42_RS24070 - hypothetical protein, at 725,055 to 726,113 _RS24070 Position (kb) 723 724 725 726Strain fitness (log2 ratio) -2 -1 0 1 2at 722.591 kb on + strandat 722.591 kb on + strandat 722.591 kb on + strandat 722.731 kb on + strand, within RR42_RS24060at 722.746 kb on + strand, within RR42_RS24060at 722.747 kb on - strand, within RR42_RS24060at 722.747 kb on - strand, within RR42_RS24060at 722.768 kb on - strand, within RR42_RS24060at 722.850 kb on - strand, within RR42_RS24060at 722.854 kb on - strand, within RR42_RS24060at 722.902 kb on + strand, within RR42_RS24060at 722.903 kb on - strand, within RR42_RS24060at 722.951 kb on + strand, within RR42_RS24060at 722.951 kb on + strand, within RR42_RS24060at 722.952 kb on - strand, within RR42_RS24060at 722.952 kb on - strand, within RR42_RS24060at 722.993 kb on - strand, within RR42_RS24060at 722.999 kb on + strand, within RR42_RS24060at 722.999 kb on + strand, within RR42_RS24060at 723.116 kb on + strand, within RR42_RS24060at 723.116 kb on + strand, within RR42_RS24060at 723.117 kb on - strand, within RR42_RS24060at 723.120 kb on + strand, within RR42_RS24060at 723.145 kb on + strand, within RR42_RS24060at 723.145 kb on + strand, within RR42_RS24060at 723.145 kb on + strand, within RR42_RS24060at 723.146 kb on - strand, within RR42_RS24060at 723.146 kb on - strand, within RR42_RS24060at 723.146 kb on - strand, within RR42_RS24060at 723.585 kb on + strandat 723.585 kb on + strandat 723.598 kb on - strandat 723.598 kb on - strandat 723.686 kb on - strandat 723.686 kb on - strandat 723.686 kb on - strandat 723.914 kb on + strand, within RR42_RS24065at 723.915 kb on - strand, within RR42_RS24065at 723.951 kb on + strand, within RR42_RS24065at 723.997 kb on + strand, within RR42_RS24065at 723.998 kb on - strand, within RR42_RS24065at 723.998 kb on - strand, within RR42_RS24065at 723.998 kb on - strand, within RR42_RS24065at 724.002 kb on + strand, within RR42_RS24065at 724.002 kb on + strand, within RR42_RS24065at 724.003 kb on - strand, within RR42_RS24065at 724.044 kb on + strand, within RR42_RS24065at 724.156 kb on + strand, within RR42_RS24065at 724.156 kb on + strand, within RR42_RS24065at 724.157 kb on - strand, within RR42_RS24065at 724.157 kb on - strand, within RR42_RS24065at 724.157 kb on - strand, within RR42_RS24065at 724.477 kb on - strand, within RR42_RS24065at 724.477 kb on - strand, within RR42_RS24065at 724.540 kb on + strand, within RR42_RS24065at 724.598 kb on + strand, within RR42_RS24065at 724.599 kb on - strand, within RR42_RS24065at 724.828 kb on - strand, within RR42_RS24065at 724.944 kb on - strandat 724.949 kb on + strandat 724.950 kb on - strandat 725.038 kb on + strandat 725.038 kb on + strandat 725.039 kb on - strandat 725.092 kb on + strandat 725.149 kb on + strandat 725.150 kb on - strandat 725.171 kb on + strand, within RR42_RS24070at 725.183 kb on + strand, within RR42_RS24070at 725.183 kb on + strand, within RR42_RS24070at 725.183 kb on + strand, within RR42_RS24070at 725.197 kb on - strand, within RR42_RS24070at 725.197 kb on - strand, within RR42_RS24070at 725.197 kb on - strand, within RR42_RS24070at 725.204 kb on + strand, within RR42_RS24070at 725.338 kb on + strand, within RR42_RS24070at 725.338 kb on + strand, within RR42_RS24070at 725.339 kb on - strand, within RR42_RS24070at 725.339 kb on - strand, within RR42_RS24070at 725.339 kb on - strand, within RR42_RS24070at 725.339 kb on - strand, within RR42_RS24070at 725.340 kb on + strand, within RR42_RS24070at 725.341 kb on - strand, within RR42_RS24070at 725.350 kb on + strand, within RR42_RS24070at 725.439 kb on + strand, within RR42_RS24070at 725.440 kb on - strand, within RR42_RS24070at 725.440 kb on - strand, within RR42_RS24070at 725.449 kb on - strand, within RR42_RS24070at 725.449 kb on - strand, within RR42_RS24070at 725.449 kb on - strand, within RR42_RS24070at 725.472 kb on + strand, within RR42_RS24070at 725.473 kb on - strand, within RR42_RS24070at 725.484 kb on + strand, within RR42_RS24070at 725.502 kb on + strand, within RR42_RS24070at 725.502 kb on + strand, within RR42_RS24070at 725.502 kb on + strand, within RR42_RS24070at 725.502 kb on + strand, within RR42_RS24070at 725.503 kb on - strand, within RR42_RS24070at 725.503 kb on - strand, within RR42_RS24070at 725.569 kb on - strand, within RR42_RS24070at 725.582 kb on + strand, within RR42_RS24070at 725.912 kb on - strand, within RR42_RS24070at 725.943 kb on + strand, within RR42_RS24070at 725.943 kb on + strand, within RR42_RS24070at 725.943 kb on + strand, within RR42_RS24070at 725.944 kb on - strand, within RR42_RS24070at 726.001 kb on + strand, within RR42_RS24070at 726.002 kb on - strand, within RR42_RS24070at 726.002 kb on - strand, within RR42_RS24070at 726.002 kb on - strand, within RR42_RS24070at 726.016 kb on + strandat 726.016 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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722,591 + +0.2
722,591 + +0.6
722,591 + -1.6
722,731 + RR42_RS24060 0.15 -1.0
722,746 + RR42_RS24060 0.17 -0.7
722,747 - RR42_RS24060 0.17 -0.4
722,747 - RR42_RS24060 0.17 -0.0
722,768 - RR42_RS24060 0.19 +1.3
722,850 - RR42_RS24060 0.28 -0.1
722,854 - RR42_RS24060 0.28 +0.7
722,902 + RR42_RS24060 0.33 +0.1
722,903 - RR42_RS24060 0.33 -1.5
722,951 + RR42_RS24060 0.38 -0.3
722,951 + RR42_RS24060 0.38 +0.0
722,952 - RR42_RS24060 0.39 -0.4
722,952 - RR42_RS24060 0.39 +0.0
722,993 - RR42_RS24060 0.43 -0.7
722,999 + RR42_RS24060 0.44 +0.5
722,999 + RR42_RS24060 0.44 -0.7
723,116 + RR42_RS24060 0.56 -1.1
723,116 + RR42_RS24060 0.56 +0.6
723,117 - RR42_RS24060 0.56 +0.6
723,120 + RR42_RS24060 0.56 -1.4
723,145 + RR42_RS24060 0.59 +0.2
723,145 + RR42_RS24060 0.59 +0.0
723,145 + RR42_RS24060 0.59 -0.6
723,146 - RR42_RS24060 0.59 -0.6
723,146 - RR42_RS24060 0.59 -0.5
723,146 - RR42_RS24060 0.59 +0.1
723,585 + -0.1
723,585 + -0.9
723,598 - -0.6
723,598 - -1.0
723,686 - -1.0
723,686 - -0.5
723,686 - -0.1
723,914 + RR42_RS24065 0.22 +0.1
723,915 - RR42_RS24065 0.23 -0.5
723,951 + RR42_RS24065 0.25 -0.3
723,997 + RR42_RS24065 0.28 -1.0
723,998 - RR42_RS24065 0.28 -0.3
723,998 - RR42_RS24065 0.28 -0.4
723,998 - RR42_RS24065 0.28 +0.4
724,002 + RR42_RS24065 0.29 -0.5
724,002 + RR42_RS24065 0.29 +0.8
724,003 - RR42_RS24065 0.29 +0.5
724,044 + RR42_RS24065 0.31 -0.1
724,156 + RR42_RS24065 0.39 -0.6
724,156 + RR42_RS24065 0.39 -2.2
724,157 - RR42_RS24065 0.39 -0.6
724,157 - RR42_RS24065 0.39 -0.9
724,157 - RR42_RS24065 0.39 -1.9
724,477 - RR42_RS24065 0.62 -0.5
724,477 - RR42_RS24065 0.62 +0.1
724,540 + RR42_RS24065 0.66 +0.4
724,598 + RR42_RS24065 0.70 -0.2
724,599 - RR42_RS24065 0.70 +0.3
724,828 - RR42_RS24065 0.86 +0.2
724,944 - -1.3
724,949 + -0.8
724,950 - +0.5
725,038 + +0.8
725,038 + +0.7
725,039 - -1.3
725,092 + -0.3
725,149 + +0.5
725,150 - +1.4
725,171 + RR42_RS24070 0.11 -0.5
725,183 + RR42_RS24070 0.12 -0.3
725,183 + RR42_RS24070 0.12 -0.0
725,183 + RR42_RS24070 0.12 -0.1
725,197 - RR42_RS24070 0.13 -0.2
725,197 - RR42_RS24070 0.13 -0.1
725,197 - RR42_RS24070 0.13 +0.3
725,204 + RR42_RS24070 0.14 +1.0
725,338 + RR42_RS24070 0.27 +1.0
725,338 + RR42_RS24070 0.27 -0.7
725,339 - RR42_RS24070 0.27 +2.0
725,339 - RR42_RS24070 0.27 +0.3
725,339 - RR42_RS24070 0.27 +0.5
725,339 - RR42_RS24070 0.27 -0.4
725,340 + RR42_RS24070 0.27 +0.6
725,341 - RR42_RS24070 0.27 -0.2
725,350 + RR42_RS24070 0.28 +0.2
725,439 + RR42_RS24070 0.36 +0.7
725,440 - RR42_RS24070 0.36 +0.2
725,440 - RR42_RS24070 0.36 +0.6
725,449 - RR42_RS24070 0.37 +0.1
725,449 - RR42_RS24070 0.37 +0.4
725,449 - RR42_RS24070 0.37 +0.9
725,472 + RR42_RS24070 0.39 +0.2
725,473 - RR42_RS24070 0.39 -0.2
725,484 + RR42_RS24070 0.41 -0.2
725,502 + RR42_RS24070 0.42 -0.4
725,502 + RR42_RS24070 0.42 -0.0
725,502 + RR42_RS24070 0.42 +0.4
725,502 + RR42_RS24070 0.42 -0.5
725,503 - RR42_RS24070 0.42 +0.1
725,503 - RR42_RS24070 0.42 -0.2
725,569 - RR42_RS24070 0.49 +0.5
725,582 + RR42_RS24070 0.50 +0.3
725,912 - RR42_RS24070 0.81 +0.1
725,943 + RR42_RS24070 0.84 -0.4
725,943 + RR42_RS24070 0.84 -0.7
725,943 + RR42_RS24070 0.84 -0.4
725,944 - RR42_RS24070 0.84 -0.6
726,001 + RR42_RS24070 0.89 -0.5
726,002 - RR42_RS24070 0.89 +0.6
726,002 - RR42_RS24070 0.89 +0.2
726,002 - RR42_RS24070 0.89 +0.1
726,016 + +0.3
726,016 + +0.2

Or see this region's nucleotide sequence