Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23675

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23670 and RR42_RS23675 are separated by 46 nucleotidesRR42_RS23675 and RR42_RS23680 are separated by 276 nucleotides RR42_RS23670: RR42_RS23670 - DSBA oxidoreductase, at 637,396 to 638,883 _RS23670 RR42_RS23675: RR42_RS23675 - hypothetical protein, at 638,930 to 639,271 _RS23675 RR42_RS23680: RR42_RS23680 - LacI family transcriptional regulator, at 639,548 to 640,558 _RS23680 Position (kb) 638 639 640Strain fitness (log2 ratio) -2 -1 0 1at 637.963 kb on + strand, within RR42_RS23670at 637.963 kb on + strand, within RR42_RS23670at 637.963 kb on + strand, within RR42_RS23670at 637.963 kb on + strand, within RR42_RS23670at 637.964 kb on - strand, within RR42_RS23670at 637.964 kb on - strand, within RR42_RS23670at 638.471 kb on + strand, within RR42_RS23670at 638.471 kb on + strand, within RR42_RS23670at 638.471 kb on + strand, within RR42_RS23670at 638.471 kb on + strand, within RR42_RS23670at 638.646 kb on + strand, within RR42_RS23670at 638.646 kb on + strand, within RR42_RS23670at 638.647 kb on - strand, within RR42_RS23670at 638.647 kb on - strand, within RR42_RS23670at 638.647 kb on - strand, within RR42_RS23670at 638.647 kb on - strand, within RR42_RS23670at 638.648 kb on + strand, within RR42_RS23670at 638.648 kb on + strand, within RR42_RS23670at 638.648 kb on + strand, within RR42_RS23670at 638.649 kb on - strand, within RR42_RS23670at 638.649 kb on - strand, within RR42_RS23670at 638.649 kb on - strand, within RR42_RS23670at 638.997 kb on + strand, within RR42_RS23675at 638.997 kb on + strand, within RR42_RS23675at 638.998 kb on - strand, within RR42_RS23675at 639.154 kb on + strand, within RR42_RS23675at 639.198 kb on - strand, within RR42_RS23675at 639.209 kb on + strand, within RR42_RS23675at 639.209 kb on + strand, within RR42_RS23675at 639.210 kb on - strand, within RR42_RS23675at 639.358 kb on - strandat 639.362 kb on + strandat 639.363 kb on - strandat 639.398 kb on + strandat 639.398 kb on + strandat 639.402 kb on + strandat 639.403 kb on + strandat 639.403 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.429 kb on + strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.430 kb on - strandat 639.432 kb on - strandat 639.535 kb on + strandat 639.535 kb on + strandat 639.911 kb on + strand, within RR42_RS23680at 639.912 kb on - strand, within RR42_RS23680at 640.049 kb on + strand, within RR42_RS23680at 640.050 kb on - strand, within RR42_RS23680at 640.136 kb on + strand, within RR42_RS23680at 640.136 kb on + strand, within RR42_RS23680at 640.136 kb on + strand, within RR42_RS23680at 640.137 kb on - strand, within RR42_RS23680at 640.137 kb on - strand, within RR42_RS23680at 640.138 kb on + strand, within RR42_RS23680

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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637,963 + RR42_RS23670 0.38 +0.5
637,963 + RR42_RS23670 0.38 +0.1
637,963 + RR42_RS23670 0.38 -1.3
637,963 + RR42_RS23670 0.38 +0.3
637,964 - RR42_RS23670 0.38 -0.4
637,964 - RR42_RS23670 0.38 +1.6
638,471 + RR42_RS23670 0.72 +0.6
638,471 + RR42_RS23670 0.72 -0.3
638,471 + RR42_RS23670 0.72 -0.4
638,471 + RR42_RS23670 0.72 -0.1
638,646 + RR42_RS23670 0.84 +0.7
638,646 + RR42_RS23670 0.84 +0.7
638,647 - RR42_RS23670 0.84 -0.6
638,647 - RR42_RS23670 0.84 -0.0
638,647 - RR42_RS23670 0.84 +0.4
638,647 - RR42_RS23670 0.84 +0.0
638,648 + RR42_RS23670 0.84 +0.6
638,648 + RR42_RS23670 0.84 +0.6
638,648 + RR42_RS23670 0.84 -0.3
638,649 - RR42_RS23670 0.84 +0.6
638,649 - RR42_RS23670 0.84 -0.0
638,649 - RR42_RS23670 0.84 +0.1
638,997 + RR42_RS23675 0.20 +1.0
638,997 + RR42_RS23675 0.20 +0.4
638,998 - RR42_RS23675 0.20 +0.8
639,154 + RR42_RS23675 0.65 +0.6
639,198 - RR42_RS23675 0.78 +0.7
639,209 + RR42_RS23675 0.82 -0.0
639,209 + RR42_RS23675 0.82 -1.0
639,210 - RR42_RS23675 0.82 +0.8
639,358 - -1.8
639,362 + -0.9
639,363 - +0.1
639,398 + +0.6
639,398 + -0.0
639,402 + -0.6
639,403 + -0.2
639,403 + -1.5
639,429 + +1.2
639,429 + -0.2
639,429 + +0.4
639,429 + +0.7
639,429 + -0.0
639,429 + -1.6
639,429 + -0.0
639,429 + +1.1
639,429 + -0.4
639,429 + -0.5
639,429 + +0.7
639,429 + -1.0
639,429 + -0.6
639,429 + +0.2
639,429 + -0.2
639,429 + +1.4
639,429 + -0.2
639,430 - +0.4
639,430 - -0.6
639,430 - +0.5
639,430 - +0.4
639,430 - -0.3
639,430 - -0.0
639,430 - +0.4
639,430 - +0.1
639,430 - -0.3
639,430 - -0.4
639,430 - -0.3
639,430 - +0.8
639,430 - +1.0
639,432 - +0.1
639,535 + +0.1
639,535 + +0.2
639,911 + RR42_RS23680 0.36 +0.2
639,912 - RR42_RS23680 0.36 +0.4
640,049 + RR42_RS23680 0.50 +0.4
640,050 - RR42_RS23680 0.50 +0.1
640,136 + RR42_RS23680 0.58 -0.1
640,136 + RR42_RS23680 0.58 +0.5
640,136 + RR42_RS23680 0.58 -0.1
640,137 - RR42_RS23680 0.58 +1.0
640,137 - RR42_RS23680 0.58 +0.5
640,138 + RR42_RS23680 0.58 -0.5

Or see this region's nucleotide sequence