Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22745

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22740 and RR42_RS22745 are separated by 294 nucleotidesRR42_RS22745 and RR42_RS22750 are separated by 100 nucleotidesRR42_RS22750 and RR42_RS22755 are separated by 67 nucleotides RR42_RS22740: RR42_RS22740 - oxidoreductase, at 435,700 to 436,494 _RS22740 RR42_RS22745: RR42_RS22745 - phosphoribosylglycinamide formyltransferase, at 436,789 to 437,949 _RS22745 RR42_RS22750: RR42_RS22750 - aspartate racemase, at 438,050 to 438,748 _RS22750 RR42_RS22755: RR42_RS22755 - hypothetical protein, at 438,816 to 439,196 _RS22755 Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1 2at 436.034 kb on + strand, within RR42_RS22740at 436.035 kb on - strand, within RR42_RS22740at 436.035 kb on - strand, within RR42_RS22740at 436.057 kb on - strand, within RR42_RS22740at 436.101 kb on + strand, within RR42_RS22740at 436.124 kb on + strand, within RR42_RS22740at 436.124 kb on + strand, within RR42_RS22740at 436.124 kb on + strand, within RR42_RS22740at 436.125 kb on - strand, within RR42_RS22740at 436.234 kb on + strand, within RR42_RS22740at 436.537 kb on + strandat 436.537 kb on + strandat 436.538 kb on - strandat 436.538 kb on - strandat 436.635 kb on + strandat 436.635 kb on + strandat 436.635 kb on + strandat 436.636 kb on - strandat 436.707 kb on + strandat 436.707 kb on + strandat 436.708 kb on - strandat 436.708 kb on - strandat 436.722 kb on + strandat 436.723 kb on - strandat 437.140 kb on + strand, within RR42_RS22745at 437.287 kb on + strand, within RR42_RS22745at 437.288 kb on - strand, within RR42_RS22745at 437.353 kb on + strand, within RR42_RS22745at 437.740 kb on + strand, within RR42_RS22745at 437.740 kb on + strand, within RR42_RS22745at 437.740 kb on + strand, within RR42_RS22745at 437.740 kb on + strand, within RR42_RS22745at 437.741 kb on - strand, within RR42_RS22745at 437.959 kb on - strandat 437.969 kb on - strandat 438.061 kb on + strandat 438.062 kb on - strandat 438.062 kb on - strandat 438.163 kb on - strand, within RR42_RS22750at 438.191 kb on + strand, within RR42_RS22750at 438.228 kb on + strand, within RR42_RS22750at 438.228 kb on + strand, within RR42_RS22750at 438.228 kb on + strand, within RR42_RS22750at 438.323 kb on + strand, within RR42_RS22750at 438.323 kb on + strand, within RR42_RS22750at 438.323 kb on + strand, within RR42_RS22750at 438.323 kb on + strand, within RR42_RS22750at 438.324 kb on - strand, within RR42_RS22750at 438.358 kb on + strand, within RR42_RS22750at 438.359 kb on - strand, within RR42_RS22750at 438.668 kb on - strand, within RR42_RS22750at 438.744 kb on - strandat 438.776 kb on + strandat 438.776 kb on + strandat 438.776 kb on + strandat 438.776 kb on + strandat 438.776 kb on + strandat 438.776 kb on + strandat 438.777 kb on - strandat 438.779 kb on + strandat 438.779 kb on + strandat 438.779 kb on + strandat 438.780 kb on - strandat 438.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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436,034 + RR42_RS22740 0.42 -1.6
436,035 - RR42_RS22740 0.42 -0.6
436,035 - RR42_RS22740 0.42 -0.9
436,057 - RR42_RS22740 0.45 +0.8
436,101 + RR42_RS22740 0.50 +0.2
436,124 + RR42_RS22740 0.53 +0.3
436,124 + RR42_RS22740 0.53 +0.6
436,124 + RR42_RS22740 0.53 -0.9
436,125 - RR42_RS22740 0.53 -0.8
436,234 + RR42_RS22740 0.67 -0.0
436,537 + -0.9
436,537 + -0.6
436,538 - -0.6
436,538 - -0.0
436,635 + +0.2
436,635 + +0.5
436,635 + +0.1
436,636 - -0.2
436,707 + -0.5
436,707 + +1.3
436,708 - -0.2
436,708 - +0.3
436,722 + -0.0
436,723 - +0.8
437,140 + RR42_RS22745 0.30 -0.6
437,287 + RR42_RS22745 0.43 -0.9
437,288 - RR42_RS22745 0.43 -0.7
437,353 + RR42_RS22745 0.49 +1.4
437,740 + RR42_RS22745 0.82 +0.3
437,740 + RR42_RS22745 0.82 -0.0
437,740 + RR42_RS22745 0.82 -0.0
437,740 + RR42_RS22745 0.82 -1.7
437,741 - RR42_RS22745 0.82 +0.7
437,959 - -0.1
437,969 - +0.4
438,061 + +0.1
438,062 - +0.6
438,062 - +0.4
438,163 - RR42_RS22750 0.16 +0.5
438,191 + RR42_RS22750 0.20 -0.4
438,228 + RR42_RS22750 0.25 +0.2
438,228 + RR42_RS22750 0.25 +1.6
438,228 + RR42_RS22750 0.25 -1.3
438,323 + RR42_RS22750 0.39 -0.3
438,323 + RR42_RS22750 0.39 +0.1
438,323 + RR42_RS22750 0.39 -0.3
438,323 + RR42_RS22750 0.39 +0.9
438,324 - RR42_RS22750 0.39 -0.1
438,358 + RR42_RS22750 0.44 +0.3
438,359 - RR42_RS22750 0.44 -1.7
438,668 - RR42_RS22750 0.88 -0.1
438,744 - +1.7
438,776 + -0.3
438,776 + +0.4
438,776 + +0.8
438,776 + -1.0
438,776 + -0.8
438,776 + +2.1
438,777 - +0.1
438,779 + +0.3
438,779 + -0.7
438,779 + -1.0
438,780 - -2.3
438,780 - +0.7

Or see this region's nucleotide sequence