Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22370 and RR42_RS22375 are separated by 142 nucleotides RR42_RS22375 and RR42_RS22380 are separated by 222 nucleotides RR42_RS22380 and RR42_RS22385 are separated by 85 nucleotides
RR42_RS22370: RR42_RS22370 - hypothetical protein, at 356,977 to 357,252
_RS22370
RR42_RS22375: RR42_RS22375 - glyoxalase, at 357,395 to 357,775
_RS22375
RR42_RS22380: RR42_RS22380 - hypothetical protein, at 357,998 to 358,435
_RS22380
RR42_RS22385: RR42_RS22385 - twin-arginine translocation pathway signal, at 358,521 to 359,498
_RS22385
Position (kb) 357
358
359 Strain fitness (log2 ratio) -2
-1
0
1 at 357.284 kb on - strand at 357.317 kb on - strand at 357.461 kb on + strand, within RR42_RS22375 at 357.462 kb on - strand, within RR42_RS22375 at 357.469 kb on + strand, within RR42_RS22375 at 357.516 kb on - strand, within RR42_RS22375 at 357.516 kb on - strand, within RR42_RS22375 at 357.516 kb on - strand, within RR42_RS22375 at 357.545 kb on + strand, within RR42_RS22375 at 357.546 kb on - strand, within RR42_RS22375 at 357.656 kb on + strand, within RR42_RS22375 at 357.656 kb on + strand, within RR42_RS22375 at 357.656 kb on + strand, within RR42_RS22375 at 357.656 kb on + strand, within RR42_RS22375 at 357.657 kb on - strand, within RR42_RS22375 at 357.657 kb on - strand, within RR42_RS22375 at 357.749 kb on - strand at 357.773 kb on + strand at 357.773 kb on + strand at 357.774 kb on - strand at 357.774 kb on - strand at 357.774 kb on - strand at 357.822 kb on + strand at 357.823 kb on - strand at 358.000 kb on - strand at 358.047 kb on + strand, within RR42_RS22380 at 358.048 kb on - strand, within RR42_RS22380 at 358.138 kb on - strand, within RR42_RS22380 at 358.166 kb on + strand, within RR42_RS22380 at 358.166 kb on + strand, within RR42_RS22380 at 358.167 kb on - strand, within RR42_RS22380 at 358.167 kb on - strand, within RR42_RS22380 at 358.390 kb on + strand, within RR42_RS22380 at 358.390 kb on + strand, within RR42_RS22380 at 358.429 kb on + strand at 358.430 kb on - strand at 358.430 kb on - strand at 358.430 kb on - strand at 358.513 kb on + strand at 358.551 kb on + strand at 358.551 kb on + strand at 358.698 kb on + strand, within RR42_RS22385 at 358.729 kb on + strand, within RR42_RS22385 at 358.729 kb on + strand, within RR42_RS22385 at 358.730 kb on - strand, within RR42_RS22385 at 358.777 kb on + strand, within RR42_RS22385 at 358.777 kb on + strand, within RR42_RS22385 at 358.777 kb on + strand, within RR42_RS22385 at 358.815 kb on - strand, within RR42_RS22385 at 358.815 kb on - strand, within RR42_RS22385 at 358.893 kb on - strand, within RR42_RS22385 at 358.943 kb on + strand, within RR42_RS22385 at 358.943 kb on + strand, within RR42_RS22385 at 358.943 kb on + strand, within RR42_RS22385 at 358.943 kb on + strand, within RR42_RS22385 at 359.053 kb on + strand, within RR42_RS22385 at 359.054 kb on - strand, within RR42_RS22385 at 359.195 kb on + strand, within RR42_RS22385 at 359.195 kb on + strand, within RR42_RS22385 at 359.195 kb on + strand, within RR42_RS22385 at 359.227 kb on + strand, within RR42_RS22385 at 359.410 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 357,284 - +0.5 357,317 - -1.1 357,461 + RR42_RS22375 0.17 -0.0 357,462 - RR42_RS22375 0.18 -1.6 357,469 + RR42_RS22375 0.19 +0.2 357,516 - RR42_RS22375 0.32 -0.6 357,516 - RR42_RS22375 0.32 -0.2 357,516 - RR42_RS22375 0.32 +0.2 357,545 + RR42_RS22375 0.39 +0.7 357,546 - RR42_RS22375 0.40 -0.3 357,656 + RR42_RS22375 0.69 +0.8 357,656 + RR42_RS22375 0.69 +0.2 357,656 + RR42_RS22375 0.69 +1.1 357,656 + RR42_RS22375 0.69 +0.4 357,657 - RR42_RS22375 0.69 +0.7 357,657 - RR42_RS22375 0.69 +0.2 357,749 - -1.4 357,773 + +0.2 357,773 + -0.3 357,774 - -0.3 357,774 - +1.7 357,774 - +0.2 357,822 + +0.3 357,823 - +1.1 358,000 - -0.4 358,047 + RR42_RS22380 0.11 +0.1 358,048 - RR42_RS22380 0.11 +1.0 358,138 - RR42_RS22380 0.32 -0.2 358,166 + RR42_RS22380 0.38 +0.2 358,166 + RR42_RS22380 0.38 +0.7 358,167 - RR42_RS22380 0.39 +1.1 358,167 - RR42_RS22380 0.39 -0.5 358,390 + RR42_RS22380 0.89 +0.5 358,390 + RR42_RS22380 0.89 +0.4 358,429 + -2.7 358,430 - -0.2 358,430 - +0.1 358,430 - -0.2 358,513 + -1.1 358,551 + +0.3 358,551 + +0.6 358,698 + RR42_RS22385 0.18 -0.0 358,729 + RR42_RS22385 0.21 -0.1 358,729 + RR42_RS22385 0.21 +0.3 358,730 - RR42_RS22385 0.21 +0.4 358,777 + RR42_RS22385 0.26 -1.2 358,777 + RR42_RS22385 0.26 -1.7 358,777 + RR42_RS22385 0.26 +0.3 358,815 - RR42_RS22385 0.30 -0.1 358,815 - RR42_RS22385 0.30 +0.2 358,893 - RR42_RS22385 0.38 -0.1 358,943 + RR42_RS22385 0.43 -0.1 358,943 + RR42_RS22385 0.43 +0.6 358,943 + RR42_RS22385 0.43 -0.5 358,943 + RR42_RS22385 0.43 -0.6 359,053 + RR42_RS22385 0.54 +0.2 359,054 - RR42_RS22385 0.54 -0.1 359,195 + RR42_RS22385 0.69 +0.7 359,195 + RR42_RS22385 0.69 -0.1 359,195 + RR42_RS22385 0.69 +0.3 359,227 + RR42_RS22385 0.72 +0.2 359,410 + -0.0
Or see this region's nucleotide sequence