Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21485

Experiment: Ethanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS21480 and RR42_RS21485 are separated by 120 nucleotidesRR42_RS21485 and RR42_RS21490 are separated by 515 nucleotidesRR42_RS21490 and RR42_RS21495 are separated by 129 nucleotides RR42_RS21480: RR42_RS21480 - membrane protein, at 147,872 to 148,822 _RS21480 RR42_RS21485: RR42_RS21485 - aldehyde dehydrogenase, at 148,943 to 150,307 _RS21485 RR42_RS21490: RR42_RS21490 - hypothetical protein, at 150,823 to 151,119 _RS21490 RR42_RS21495: RR42_RS21495 - adenosine deaminase, at 151,249 to 152,676 _RS21495 Position (kb) 148 149 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 148.072 kb on - strand, within RR42_RS21480at 148.115 kb on + strand, within RR42_RS21480at 148.115 kb on + strand, within RR42_RS21480at 148.116 kb on - strand, within RR42_RS21480at 148.116 kb on - strand, within RR42_RS21480at 148.167 kb on + strand, within RR42_RS21480at 148.218 kb on + strand, within RR42_RS21480at 148.305 kb on + strand, within RR42_RS21480at 148.504 kb on + strand, within RR42_RS21480at 148.521 kb on + strand, within RR42_RS21480at 148.522 kb on - strand, within RR42_RS21480at 148.629 kb on + strand, within RR42_RS21480at 148.902 kb on + strandat 148.903 kb on - strandat 148.903 kb on - strandat 148.903 kb on - strandat 148.903 kb on - strandat 148.903 kb on - strandat 148.944 kb on + strandat 148.944 kb on + strandat 148.974 kb on - strandat 148.974 kb on - strandat 148.999 kb on - strandat 149.053 kb on - strandat 149.071 kb on + strandat 149.072 kb on - strandat 149.072 kb on - strandat 149.072 kb on - strandat 149.158 kb on + strand, within RR42_RS21485at 149.161 kb on - strand, within RR42_RS21485at 149.161 kb on - strand, within RR42_RS21485at 149.161 kb on - strand, within RR42_RS21485at 149.181 kb on + strand, within RR42_RS21485at 149.255 kb on + strand, within RR42_RS21485at 149.256 kb on - strand, within RR42_RS21485at 149.333 kb on - strand, within RR42_RS21485at 149.382 kb on + strand, within RR42_RS21485at 149.382 kb on + strand, within RR42_RS21485at 149.382 kb on + strand, within RR42_RS21485at 149.382 kb on + strand, within RR42_RS21485at 149.383 kb on - strand, within RR42_RS21485at 149.383 kb on - strand, within RR42_RS21485at 149.383 kb on - strand, within RR42_RS21485at 149.383 kb on - strand, within RR42_RS21485at 149.383 kb on - strand, within RR42_RS21485at 149.485 kb on + strand, within RR42_RS21485at 149.486 kb on - strand, within RR42_RS21485at 149.500 kb on + strand, within RR42_RS21485at 149.602 kb on + strand, within RR42_RS21485at 149.602 kb on + strand, within RR42_RS21485at 149.602 kb on + strand, within RR42_RS21485at 149.686 kb on - strand, within RR42_RS21485at 149.746 kb on + strand, within RR42_RS21485at 149.746 kb on + strand, within RR42_RS21485at 149.746 kb on + strand, within RR42_RS21485at 149.746 kb on + strand, within RR42_RS21485at 149.747 kb on - strand, within RR42_RS21485at 149.747 kb on - strand, within RR42_RS21485at 149.747 kb on - strand, within RR42_RS21485at 149.801 kb on + strand, within RR42_RS21485at 150.014 kb on + strand, within RR42_RS21485at 150.015 kb on - strand, within RR42_RS21485at 150.015 kb on - strand, within RR42_RS21485at 150.034 kb on - strand, within RR42_RS21485at 150.193 kb on + strandat 150.193 kb on + strandat 150.193 kb on + strandat 150.194 kb on - strandat 150.309 kb on + strandat 150.309 kb on + strandat 150.309 kb on + strandat 150.309 kb on + strandat 150.310 kb on - strandat 150.457 kb on + strandat 150.458 kb on - strandat 150.478 kb on - strandat 150.478 kb on - strandat 150.478 kb on - strandat 150.479 kb on + strandat 150.480 kb on - strandat 150.480 kb on - strandat 150.480 kb on - strandat 150.590 kb on + strandat 150.603 kb on - strandat 150.702 kb on + strandat 150.703 kb on - strandat 151.214 kb on + strandat 151.237 kb on - strandat 151.237 kb on - strandat 151.237 kb on - strandat 151.273 kb on + strandat 151.274 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
remove
148,072 - RR42_RS21480 0.21 +0.5
148,115 + RR42_RS21480 0.26 +0.7
148,115 + RR42_RS21480 0.26 -0.3
148,116 - RR42_RS21480 0.26 +0.7
148,116 - RR42_RS21480 0.26 -1.8
148,167 + RR42_RS21480 0.31 +0.1
148,218 + RR42_RS21480 0.36 -1.2
148,305 + RR42_RS21480 0.46 +0.3
148,504 + RR42_RS21480 0.66 -0.1
148,521 + RR42_RS21480 0.68 -0.7
148,522 - RR42_RS21480 0.68 -0.3
148,629 + RR42_RS21480 0.80 +0.5
148,902 + -2.4
148,903 - +0.3
148,903 - +0.2
148,903 - +0.1
148,903 - -0.4
148,903 - +0.2
148,944 + -0.3
148,944 + +1.7
148,974 - -1.2
148,974 - -0.5
148,999 - +0.7
149,053 - +0.2
149,071 + +0.2
149,072 - +0.8
149,072 - -0.2
149,072 - -1.7
149,158 + RR42_RS21485 0.16 -0.3
149,161 - RR42_RS21485 0.16 +1.4
149,161 - RR42_RS21485 0.16 +0.2
149,161 - RR42_RS21485 0.16 -0.8
149,181 + RR42_RS21485 0.17 -0.4
149,255 + RR42_RS21485 0.23 -0.0
149,256 - RR42_RS21485 0.23 +0.3
149,333 - RR42_RS21485 0.29 -0.4
149,382 + RR42_RS21485 0.32 -0.5
149,382 + RR42_RS21485 0.32 -0.1
149,382 + RR42_RS21485 0.32 -0.3
149,382 + RR42_RS21485 0.32 +0.1
149,383 - RR42_RS21485 0.32 -0.6
149,383 - RR42_RS21485 0.32 +0.1
149,383 - RR42_RS21485 0.32 -1.3
149,383 - RR42_RS21485 0.32 -3.6
149,383 - RR42_RS21485 0.32 +2.2
149,485 + RR42_RS21485 0.40 -1.2
149,486 - RR42_RS21485 0.40 +1.0
149,500 + RR42_RS21485 0.41 -0.4
149,602 + RR42_RS21485 0.48 -0.8
149,602 + RR42_RS21485 0.48 +0.5
149,602 + RR42_RS21485 0.48 -0.3
149,686 - RR42_RS21485 0.54 -0.9
149,746 + RR42_RS21485 0.59 -0.8
149,746 + RR42_RS21485 0.59 +0.5
149,746 + RR42_RS21485 0.59 +1.6
149,746 + RR42_RS21485 0.59 +0.7
149,747 - RR42_RS21485 0.59 +0.2
149,747 - RR42_RS21485 0.59 -0.9
149,747 - RR42_RS21485 0.59 -0.8
149,801 + RR42_RS21485 0.63 -0.7
150,014 + RR42_RS21485 0.78 +1.0
150,015 - RR42_RS21485 0.79 -1.8
150,015 - RR42_RS21485 0.79 -0.4
150,034 - RR42_RS21485 0.80 -0.7
150,193 + -0.6
150,193 + +0.4
150,193 + +0.6
150,194 - +1.1
150,309 + -0.5
150,309 + +1.5
150,309 + -1.3
150,309 + -1.3
150,310 - -0.8
150,457 + -0.4
150,458 - -0.8
150,478 - -0.2
150,478 - +0.5
150,478 - -0.1
150,479 + +0.2
150,480 - -0.4
150,480 - -0.4
150,480 - +0.1
150,590 + -0.1
150,603 - -0.4
150,702 + +0.5
150,703 - -0.7
151,214 + +0.5
151,237 - +0.0
151,237 - +1.3
151,237 - -1.2
151,273 + +0.3
151,274 - -0.9

Or see this region's nucleotide sequence