Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21470

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21465 and RR42_RS21470 are separated by 97 nucleotides RR42_RS21465: RR42_RS21465 - hypothetical protein, at 145,872 to 146,066 _RS21465 RR42_RS21470: RR42_RS21470 - hypothetical protein, at 146,164 to 146,538 _RS21470 Position (kb) 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1at 145.192 kb on + strandat 145.192 kb on + strandat 145.192 kb on + strandat 145.204 kb on + strandat 145.204 kb on + strandat 145.205 kb on - strandat 145.243 kb on - strandat 145.326 kb on - strandat 145.561 kb on + strandat 145.593 kb on + strandat 145.595 kb on + strandat 145.640 kb on - strandat 145.668 kb on + strandat 145.686 kb on + strandat 145.687 kb on - strandat 145.700 kb on + strandat 145.700 kb on + strandat 145.724 kb on + strandat 145.903 kb on + strand, within RR42_RS21465at 145.903 kb on + strand, within RR42_RS21465at 145.904 kb on - strand, within RR42_RS21465at 145.939 kb on + strand, within RR42_RS21465at 145.939 kb on - strand, within RR42_RS21465at 145.939 kb on - strand, within RR42_RS21465at 145.939 kb on - strand, within RR42_RS21465at 145.951 kb on - strand, within RR42_RS21465at 145.951 kb on - strand, within RR42_RS21465at 145.998 kb on - strand, within RR42_RS21465at 145.998 kb on - strand, within RR42_RS21465at 146.064 kb on + strandat 146.065 kb on - strandat 146.065 kb on - strandat 146.065 kb on - strandat 146.065 kb on - strandat 146.065 kb on - strandat 146.335 kb on + strand, within RR42_RS21470at 146.386 kb on + strand, within RR42_RS21470at 146.685 kb on + strandat 146.686 kb on - strandat 146.686 kb on - strandat 146.686 kb on - strandat 146.686 kb on - strandat 146.700 kb on + strandat 146.701 kb on - strandat 146.727 kb on + strandat 146.802 kb on + strandat 146.802 kb on + strandat 146.808 kb on + strandat 146.808 kb on + strandat 146.808 kb on + strandat 146.808 kb on + strandat 146.808 kb on + strandat 146.809 kb on - strandat 146.809 kb on - strandat 146.844 kb on + strandat 146.919 kb on + strandat 146.919 kb on + strandat 146.919 kb on + strandat 146.919 kb on + strandat 146.920 kb on - strandat 146.920 kb on - strandat 146.950 kb on + strandat 146.992 kb on - strandat 147.066 kb on + strandat 147.066 kb on + strandat 147.099 kb on + strandat 147.133 kb on - strandat 147.149 kb on - strandat 147.192 kb on + strandat 147.192 kb on + strandat 147.192 kb on + strandat 147.192 kb on + strandat 147.193 kb on - strandat 147.193 kb on - strandat 147.193 kb on - strandat 147.193 kb on - strandat 147.234 kb on + strandat 147.235 kb on - strandat 147.235 kb on - strandat 147.286 kb on - strandat 147.286 kb on - strandat 147.303 kb on + strandat 147.303 kb on + strandat 147.303 kb on + strandat 147.303 kb on + strandat 147.304 kb on - strandat 147.331 kb on + strandat 147.360 kb on + strandat 147.411 kb on + strandat 147.411 kb on + strandat 147.412 kb on - strandat 147.412 kb on - strandat 147.412 kb on - strandat 147.412 kb on - strandat 147.488 kb on + strandat 147.488 kb on + strandat 147.488 kb on + strandat 147.488 kb on + strandat 147.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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145,192 + -0.1
145,192 + -0.9
145,192 + +0.3
145,204 + -0.6
145,204 + -0.3
145,205 - +0.0
145,243 - +0.6
145,326 - +0.3
145,561 + -0.7
145,593 + -0.7
145,595 + -0.5
145,640 - +0.5
145,668 + +0.7
145,686 + +0.4
145,687 - +0.9
145,700 + -0.4
145,700 + -0.2
145,724 + -0.8
145,903 + RR42_RS21465 0.16 -0.4
145,903 + RR42_RS21465 0.16 +0.1
145,904 - RR42_RS21465 0.16 +0.3
145,939 + RR42_RS21465 0.34 +0.6
145,939 - RR42_RS21465 0.34 +1.1
145,939 - RR42_RS21465 0.34 +0.3
145,939 - RR42_RS21465 0.34 +0.3
145,951 - RR42_RS21465 0.41 +0.1
145,951 - RR42_RS21465 0.41 +0.6
145,998 - RR42_RS21465 0.65 -2.7
145,998 - RR42_RS21465 0.65 +0.3
146,064 + +0.4
146,065 - -1.7
146,065 - -0.2
146,065 - +0.8
146,065 - -0.3
146,065 - +0.0
146,335 + RR42_RS21470 0.46 +1.2
146,386 + RR42_RS21470 0.59 +1.4
146,685 + +0.6
146,686 - +0.1
146,686 - +0.1
146,686 - +1.3
146,686 - -0.4
146,700 + +1.1
146,701 - +0.6
146,727 + -0.6
146,802 + -0.3
146,802 + +0.0
146,808 + -1.0
146,808 + +0.1
146,808 + +0.9
146,808 + +0.2
146,808 + -0.2
146,809 - -0.7
146,809 - +0.5
146,844 + +0.4
146,919 + +0.2
146,919 + +0.7
146,919 + +0.4
146,919 + -2.4
146,920 - +0.7
146,920 - +1.0
146,950 + +0.8
146,992 - +0.1
147,066 + +0.2
147,066 + -1.1
147,099 + -1.4
147,133 - +0.5
147,149 - -0.4
147,192 + +0.4
147,192 + -0.3
147,192 + -0.8
147,192 + +0.2
147,193 - -2.2
147,193 - +1.3
147,193 - +0.6
147,193 - -0.8
147,234 + -1.0
147,235 - +0.4
147,235 - -0.7
147,286 - +0.4
147,286 - +0.2
147,303 + +0.1
147,303 + +0.6
147,303 + +1.2
147,303 + +0.5
147,304 - -0.1
147,331 + +0.2
147,360 + +1.6
147,411 + -3.0
147,411 + -0.6
147,412 - -0.6
147,412 - +0.9
147,412 - +1.2
147,412 - -0.4
147,488 + +0.1
147,488 + -0.8
147,488 + -0.2
147,488 + +0.5
147,489 - +0.9

Or see this region's nucleotide sequence