Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21130 and RR42_RS21135 are separated by 43 nucleotides RR42_RS21135 and RR42_RS21140 are separated by 307 nucleotides
RR42_RS21130: RR42_RS21130 - ABC transporter permease, at 65,756 to 66,892
_RS21130
RR42_RS21135: RR42_RS21135 - gluconate 5-dehydrogenase, at 66,936 to 67,703
_RS21135
RR42_RS21140: RR42_RS21140 - LysR family transcriptional regulator, at 68,011 to 68,904
_RS21140
Position (kb) 66
67
68 Strain fitness (log2 ratio) -2
-1
0
1 at 65.962 kb on - strand, within RR42_RS21130 at 65.990 kb on + strand, within RR42_RS21130 at 65.990 kb on + strand, within RR42_RS21130 at 65.991 kb on - strand, within RR42_RS21130 at 65.991 kb on - strand, within RR42_RS21130 at 66.076 kb on - strand, within RR42_RS21130 at 66.198 kb on + strand, within RR42_RS21130 at 66.198 kb on + strand, within RR42_RS21130 at 66.198 kb on + strand, within RR42_RS21130 at 66.199 kb on - strand, within RR42_RS21130 at 66.209 kb on + strand, within RR42_RS21130 at 66.279 kb on - strand, within RR42_RS21130 at 66.545 kb on - strand, within RR42_RS21130 at 66.635 kb on + strand, within RR42_RS21130 at 66.788 kb on + strand at 66.890 kb on + strand at 66.925 kb on - strand at 66.926 kb on + strand at 66.941 kb on + strand at 66.941 kb on + strand at 66.942 kb on - strand at 66.942 kb on - strand at 66.942 kb on - strand at 67.241 kb on + strand, within RR42_RS21135 at 67.242 kb on - strand, within RR42_RS21135 at 67.242 kb on - strand, within RR42_RS21135 at 67.411 kb on - strand, within RR42_RS21135 at 67.418 kb on + strand, within RR42_RS21135 at 67.506 kb on + strand, within RR42_RS21135 at 67.507 kb on - strand, within RR42_RS21135 at 67.650 kb on + strand at 67.650 kb on + strand at 67.655 kb on + strand at 67.656 kb on - strand at 67.656 kb on - strand at 67.748 kb on - strand at 67.819 kb on + strand at 67.868 kb on - strand at 67.878 kb on - strand at 68.325 kb on + strand, within RR42_RS21140 at 68.326 kb on - strand, within RR42_RS21140 at 68.417 kb on - strand, within RR42_RS21140
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 65,962 - RR42_RS21130 0.18 +1.0 65,990 + RR42_RS21130 0.21 +0.8 65,990 + RR42_RS21130 0.21 +0.2 65,991 - RR42_RS21130 0.21 +0.1 65,991 - RR42_RS21130 0.21 +0.2 66,076 - RR42_RS21130 0.28 -0.0 66,198 + RR42_RS21130 0.39 -0.4 66,198 + RR42_RS21130 0.39 +0.1 66,198 + RR42_RS21130 0.39 -0.8 66,199 - RR42_RS21130 0.39 +0.1 66,209 + RR42_RS21130 0.40 +0.4 66,279 - RR42_RS21130 0.46 +0.6 66,545 - RR42_RS21130 0.69 +0.6 66,635 + RR42_RS21130 0.77 +0.3 66,788 + +0.2 66,890 + -0.4 66,925 - -1.7 66,926 + +0.0 66,941 + -0.5 66,941 + -0.1 66,942 - -0.4 66,942 - +0.3 66,942 - -0.8 67,241 + RR42_RS21135 0.40 +0.2 67,242 - RR42_RS21135 0.40 -0.1 67,242 - RR42_RS21135 0.40 -0.4 67,411 - RR42_RS21135 0.62 -1.3 67,418 + RR42_RS21135 0.63 +0.1 67,506 + RR42_RS21135 0.74 -0.6 67,507 - RR42_RS21135 0.74 -0.3 67,650 + +0.4 67,650 + +0.1 67,655 + +1.0 67,656 - +0.2 67,656 - +0.6 67,748 - +0.3 67,819 + -0.4 67,868 - +0.2 67,878 - -2.7 68,325 + RR42_RS21140 0.35 -2.2 68,326 - RR42_RS21140 0.35 +0.3 68,417 - RR42_RS21140 0.45 +0.6
Or see this region's nucleotide sequence