Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20195

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20190 and RR42_RS20195 are separated by 244 nucleotidesRR42_RS20195 and RR42_RS20200 are separated by 378 nucleotides RR42_RS20190: RR42_RS20190 - ATP synthase subunit A, at 4,366,721 to 4,367,584 _RS20190 RR42_RS20195: RR42_RS20195 - ATPase F0F1, at 4,367,829 to 4,368,329 _RS20195 RR42_RS20200: RR42_RS20200 - chromosome partitioning protein ParB, at 4,368,708 to 4,369,610 _RS20200 Position (kb) 4367 4368 4369Strain fitness (log2 ratio) -2 -1 0 1at 4367.698 kb on - strandat 4367.748 kb on - strandat 4367.855 kb on - strandat 4368.064 kb on - strand, within RR42_RS20195at 4368.449 kb on - strandat 4368.500 kb on - strandat 4368.500 kb on - strandat 4368.540 kb on - strandat 4368.549 kb on - strandat 4368.570 kb on - strandat 4368.570 kb on - strandat 4368.570 kb on - strandat 4368.570 kb on - strandat 4368.570 kb on - strandat 4368.570 kb on - strandat 4368.570 kb on - strandat 4368.571 kb on + strandat 4368.572 kb on - strandat 4368.572 kb on - strandat 4368.572 kb on - strandat 4368.572 kb on - strandat 4368.572 kb on - strandat 4368.572 kb on - strandat 4368.599 kb on + strandat 4368.600 kb on - strandat 4368.600 kb on - strandat 4368.600 kb on - strandat 4368.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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4,367,698 - -1.3
4,367,748 - -0.4
4,367,855 - -0.1
4,368,064 - RR42_RS20195 0.47 -1.3
4,368,449 - +0.7
4,368,500 - -0.4
4,368,500 - +0.4
4,368,540 - +0.4
4,368,549 - -0.9
4,368,570 - +0.0
4,368,570 - -0.5
4,368,570 - +0.3
4,368,570 - +0.1
4,368,570 - -0.3
4,368,570 - -1.4
4,368,570 - -0.6
4,368,571 + -2.0
4,368,572 - -0.4
4,368,572 - -0.7
4,368,572 - -0.3
4,368,572 - +0.6
4,368,572 - +0.1
4,368,572 - +0.2
4,368,599 + -1.5
4,368,600 - -1.7
4,368,600 - -0.2
4,368,600 - +1.3
4,368,690 - -0.1

Or see this region's nucleotide sequence