Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19520 and RR42_RS19525 are separated by 8 nucleotides RR42_RS19525 and RR42_RS19530 are separated by 16 nucleotides
RR42_RS19520: RR42_RS19520 - general secretion pathway protein GspD, at 4,213,687 to 4,216,116
_RS19520
RR42_RS19525: RR42_RS19525 - general secretion pathway protein GspE, at 4,216,125 to 4,217,672
_RS19525
RR42_RS19530: RR42_RS19530 - general secretion pathway protein GspF, at 4,217,689 to 4,218,906
_RS19530
Position (kb)
4216
4217
4218 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4215.386 kb on - strand, within RR42_RS19520 at 4215.647 kb on - strand, within RR42_RS19520 at 4215.647 kb on - strand, within RR42_RS19520 at 4215.763 kb on + strand, within RR42_RS19520 at 4215.764 kb on - strand, within RR42_RS19520 at 4215.764 kb on - strand, within RR42_RS19520 at 4215.812 kb on - strand, within RR42_RS19520 at 4215.818 kb on - strand, within RR42_RS19520 at 4215.819 kb on + strand, within RR42_RS19520 at 4215.819 kb on + strand, within RR42_RS19520 at 4215.820 kb on - strand, within RR42_RS19520 at 4215.820 kb on - strand, within RR42_RS19520 at 4215.820 kb on - strand, within RR42_RS19520 at 4215.820 kb on - strand, within RR42_RS19520 at 4215.820 kb on - strand, within RR42_RS19520 at 4215.855 kb on + strand, within RR42_RS19520 at 4215.877 kb on - strand at 4216.216 kb on - strand at 4216.217 kb on - strand at 4216.392 kb on + strand, within RR42_RS19525 at 4216.392 kb on + strand, within RR42_RS19525 at 4216.978 kb on - strand, within RR42_RS19525 at 4217.043 kb on + strand, within RR42_RS19525 at 4217.472 kb on + strand, within RR42_RS19525 at 4217.491 kb on + strand, within RR42_RS19525 at 4217.493 kb on + strand, within RR42_RS19525 at 4217.494 kb on - strand, within RR42_RS19525 at 4217.494 kb on - strand, within RR42_RS19525 at 4217.670 kb on + strand at 4217.670 kb on + strand at 4217.698 kb on + strand at 4217.698 kb on + strand at 4217.705 kb on - strand at 4217.783 kb on + strand at 4217.986 kb on + strand, within RR42_RS19530 at 4217.986 kb on + strand, within RR42_RS19530 at 4217.986 kb on + strand, within RR42_RS19530 at 4217.986 kb on + strand, within RR42_RS19530 at 4217.986 kb on + strand, within RR42_RS19530 at 4217.986 kb on + strand, within RR42_RS19530 at 4217.987 kb on - strand, within RR42_RS19530 at 4217.987 kb on - strand, within RR42_RS19530 at 4217.987 kb on - strand, within RR42_RS19530 at 4217.987 kb on - strand, within RR42_RS19530 at 4218.081 kb on + strand, within RR42_RS19530 at 4218.086 kb on - strand, within RR42_RS19530 at 4218.086 kb on - strand, within RR42_RS19530 at 4218.154 kb on + strand, within RR42_RS19530 at 4218.155 kb on - strand, within RR42_RS19530 at 4218.155 kb on - strand, within RR42_RS19530 at 4218.155 kb on - strand, within RR42_RS19530 at 4218.155 kb on - strand, within RR42_RS19530 at 4218.155 kb on - strand, within RR42_RS19530 at 4218.201 kb on + strand, within RR42_RS19530 at 4218.201 kb on + strand, within RR42_RS19530 at 4218.202 kb on - strand, within RR42_RS19530 at 4218.202 kb on - strand, within RR42_RS19530 at 4218.205 kb on + strand, within RR42_RS19530 at 4218.259 kb on + strand, within RR42_RS19530 at 4218.259 kb on + strand, within RR42_RS19530 at 4218.259 kb on + strand, within RR42_RS19530 at 4218.259 kb on + strand, within RR42_RS19530 at 4218.259 kb on + strand, within RR42_RS19530 at 4218.259 kb on + strand, within RR42_RS19530 at 4218.259 kb on + strand, within RR42_RS19530 at 4218.259 kb on + strand, within RR42_RS19530 at 4218.260 kb on - strand, within RR42_RS19530 at 4218.260 kb on - strand, within RR42_RS19530 at 4218.260 kb on - strand, within RR42_RS19530 at 4218.260 kb on - strand, within RR42_RS19530 at 4218.260 kb on - strand, within RR42_RS19530 at 4218.260 kb on - strand, within RR42_RS19530 at 4218.260 kb on - strand, within RR42_RS19530 at 4218.260 kb on - strand, within RR42_RS19530 at 4218.404 kb on + strand, within RR42_RS19530 at 4218.404 kb on + strand, within RR42_RS19530 at 4218.493 kb on + strand, within RR42_RS19530 at 4218.493 kb on + strand, within RR42_RS19530 at 4218.493 kb on + strand, within RR42_RS19530 at 4218.494 kb on - strand, within RR42_RS19530 at 4218.495 kb on + strand, within RR42_RS19530 at 4218.495 kb on + strand, within RR42_RS19530 at 4218.495 kb on + strand, within RR42_RS19530 at 4218.496 kb on - strand, within RR42_RS19530
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 4,215,386 - RR42_RS19520 0.70 +0.3 4,215,647 - RR42_RS19520 0.81 -0.2 4,215,647 - RR42_RS19520 0.81 +0.1 4,215,763 + RR42_RS19520 0.85 +0.0 4,215,764 - RR42_RS19520 0.85 +0.0 4,215,764 - RR42_RS19520 0.85 +1.3 4,215,812 - RR42_RS19520 0.87 -0.5 4,215,818 - RR42_RS19520 0.88 -0.3 4,215,819 + RR42_RS19520 0.88 -0.2 4,215,819 + RR42_RS19520 0.88 +1.0 4,215,820 - RR42_RS19520 0.88 +0.3 4,215,820 - RR42_RS19520 0.88 -2.3 4,215,820 - RR42_RS19520 0.88 +0.1 4,215,820 - RR42_RS19520 0.88 +0.3 4,215,820 - RR42_RS19520 0.88 -0.1 4,215,855 + RR42_RS19520 0.89 +0.1 4,215,877 - -0.5 4,216,216 - +1.0 4,216,217 - +0.0 4,216,392 + RR42_RS19525 0.17 -0.5 4,216,392 + RR42_RS19525 0.17 +0.9 4,216,978 - RR42_RS19525 0.55 +0.9 4,217,043 + RR42_RS19525 0.59 -1.7 4,217,472 + RR42_RS19525 0.87 +3.9 4,217,491 + RR42_RS19525 0.88 +1.9 4,217,493 + RR42_RS19525 0.88 +0.4 4,217,494 - RR42_RS19525 0.88 -0.0 4,217,494 - RR42_RS19525 0.88 -0.2 4,217,670 + +1.0 4,217,670 + -2.3 4,217,698 + +0.8 4,217,698 + +0.0 4,217,705 - +0.2 4,217,783 + -0.0 4,217,986 + RR42_RS19530 0.24 -0.6 4,217,986 + RR42_RS19530 0.24 -0.3 4,217,986 + RR42_RS19530 0.24 +0.1 4,217,986 + RR42_RS19530 0.24 +0.6 4,217,986 + RR42_RS19530 0.24 +1.3 4,217,986 + RR42_RS19530 0.24 -0.5 4,217,987 - RR42_RS19530 0.24 +0.2 4,217,987 - RR42_RS19530 0.24 +0.3 4,217,987 - RR42_RS19530 0.24 -0.6 4,217,987 - RR42_RS19530 0.24 +0.0 4,218,081 + RR42_RS19530 0.32 +0.4 4,218,086 - RR42_RS19530 0.33 +0.5 4,218,086 - RR42_RS19530 0.33 -1.3 4,218,154 + RR42_RS19530 0.38 -1.1 4,218,155 - RR42_RS19530 0.38 -0.3 4,218,155 - RR42_RS19530 0.38 +0.1 4,218,155 - RR42_RS19530 0.38 +0.3 4,218,155 - RR42_RS19530 0.38 -0.0 4,218,155 - RR42_RS19530 0.38 +0.1 4,218,201 + RR42_RS19530 0.42 +0.5 4,218,201 + RR42_RS19530 0.42 +1.3 4,218,202 - RR42_RS19530 0.42 -0.2 4,218,202 - RR42_RS19530 0.42 -0.0 4,218,205 + RR42_RS19530 0.42 -2.0 4,218,259 + RR42_RS19530 0.47 -1.6 4,218,259 + RR42_RS19530 0.47 -1.6 4,218,259 + RR42_RS19530 0.47 +0.5 4,218,259 + RR42_RS19530 0.47 +1.0 4,218,259 + RR42_RS19530 0.47 -0.1 4,218,259 + RR42_RS19530 0.47 +0.2 4,218,259 + RR42_RS19530 0.47 -0.3 4,218,259 + RR42_RS19530 0.47 +1.3 4,218,260 - RR42_RS19530 0.47 +0.7 4,218,260 - RR42_RS19530 0.47 -0.1 4,218,260 - RR42_RS19530 0.47 -0.2 4,218,260 - RR42_RS19530 0.47 +1.1 4,218,260 - RR42_RS19530 0.47 +0.3 4,218,260 - RR42_RS19530 0.47 -0.9 4,218,260 - RR42_RS19530 0.47 +0.3 4,218,260 - RR42_RS19530 0.47 +1.3 4,218,404 + RR42_RS19530 0.59 -0.2 4,218,404 + RR42_RS19530 0.59 +0.0 4,218,493 + RR42_RS19530 0.66 -1.1 4,218,493 + RR42_RS19530 0.66 +1.8 4,218,493 + RR42_RS19530 0.66 -0.9 4,218,494 - RR42_RS19530 0.66 -0.4 4,218,495 + RR42_RS19530 0.66 +0.3 4,218,495 + RR42_RS19530 0.66 -1.0 4,218,495 + RR42_RS19530 0.66 -0.1 4,218,496 - RR42_RS19530 0.66 -0.4
Or see this region's nucleotide sequence