Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15810

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15805 and RR42_RS15810 overlap by 4 nucleotidesRR42_RS15810 and RR42_RS15815 are separated by 33 nucleotidesRR42_RS15815 and RR42_RS15820 are separated by 10 nucleotides RR42_RS15805: RR42_RS15805 - spore coat protein, at 3,415,647 to 3,416,795 _RS15805 RR42_RS15810: RR42_RS15810 - UDP-N-acetylglucosamine 4,6-dehydratase, at 3,416,792 to 3,417,793 _RS15810 RR42_RS15815: RR42_RS15815 - NAD-dependent dehydratase, at 3,417,827 to 3,418,777 _RS15815 RR42_RS15820: RR42_RS15820 - UDP-glucose 6-dehydrogenase, at 3,418,788 to 3,420,149 _RS15820 Position (kb) 3416 3417 3418Strain fitness (log2 ratio) -1 0 1at 3416.348 kb on - strand, within RR42_RS15805at 3416.866 kb on - strandat 3417.074 kb on + strand, within RR42_RS15810at 3417.335 kb on + strand, within RR42_RS15810at 3417.519 kb on + strand, within RR42_RS15810at 3417.564 kb on + strand, within RR42_RS15810at 3417.565 kb on - strand, within RR42_RS15810at 3417.828 kb on + strandat 3417.829 kb on - strandat 3417.830 kb on + strandat 3417.830 kb on + strandat 3417.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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3,416,348 - RR42_RS15805 0.61 +0.1
3,416,866 - +1.0
3,417,074 + RR42_RS15810 0.28 +0.7
3,417,335 + RR42_RS15810 0.54 -1.0
3,417,519 + RR42_RS15810 0.73 -0.3
3,417,564 + RR42_RS15810 0.77 +0.3
3,417,565 - RR42_RS15810 0.77 -1.0
3,417,828 + -0.5
3,417,829 - -0.2
3,417,830 + +0.2
3,417,830 + -1.5
3,417,831 - +0.6

Or see this region's nucleotide sequence