Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15170 and RR42_RS15175 are separated by 317 nucleotides RR42_RS15175 and RR42_RS15180 are separated by 12 nucleotides RR42_RS15180 and RR42_RS15185 are separated by 445 nucleotides
RR42_RS15170: RR42_RS15170 - peptidase, at 3,284,390 to 3,286,120
_RS15170
RR42_RS15175: RR42_RS15175 - membrane protein, at 3,286,438 to 3,286,899
_RS15175
RR42_RS15180: RR42_RS15180 - hypothetical protein, at 3,286,912 to 3,288,414
_RS15180
RR42_RS15185: RR42_RS15185 - LysR family transcriptional regulator, at 3,288,860 to 3,289,777
_RS15185
Position (kb)
3286
3287
3288
3289 Strain fitness (log2 ratio)
-1
0
1
2 at 3285.956 kb on - strand at 3286.005 kb on - strand at 3286.219 kb on + strand at 3286.219 kb on + strand at 3286.267 kb on + strand at 3286.276 kb on - strand at 3286.313 kb on + strand at 3286.313 kb on + strand at 3286.334 kb on - strand at 3286.522 kb on + strand, within RR42_RS15175 at 3286.898 kb on - strand at 3286.911 kb on + strand at 3286.912 kb on - strand at 3286.919 kb on + strand at 3286.919 kb on + strand at 3286.919 kb on + strand at 3286.920 kb on - strand at 3286.922 kb on + strand at 3286.922 kb on + strand at 3286.923 kb on - strand at 3286.976 kb on - strand at 3287.203 kb on + strand, within RR42_RS15180 at 3287.746 kb on + strand, within RR42_RS15180 at 3288.121 kb on + strand, within RR42_RS15180 at 3288.181 kb on + strand, within RR42_RS15180 at 3288.412 kb on + strand at 3288.412 kb on + strand at 3288.412 kb on + strand at 3288.412 kb on + strand at 3288.412 kb on + strand at 3288.439 kb on - strand at 3288.662 kb on + strand at 3288.662 kb on + strand at 3288.828 kb on + strand at 3289.294 kb on - strand, within RR42_RS15185
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 3,285,956 - +1.9 3,286,005 - -1.2 3,286,219 + +0.6 3,286,219 + -0.0 3,286,267 + -1.3 3,286,276 - -1.2 3,286,313 + -0.4 3,286,313 + -0.0 3,286,334 - +1.5 3,286,522 + RR42_RS15175 0.18 +0.5 3,286,898 - -0.3 3,286,911 + -0.7 3,286,912 - +0.7 3,286,919 + +0.6 3,286,919 + -1.2 3,286,919 + -0.7 3,286,920 - +0.6 3,286,922 + -0.2 3,286,922 + +0.8 3,286,923 - -0.2 3,286,976 - +0.5 3,287,203 + RR42_RS15180 0.19 -0.4 3,287,746 + RR42_RS15180 0.55 -0.0 3,288,121 + RR42_RS15180 0.80 +0.7 3,288,181 + RR42_RS15180 0.84 +2.6 3,288,412 + -0.6 3,288,412 + -1.5 3,288,412 + +0.7 3,288,412 + -0.2 3,288,412 + +0.3 3,288,439 - -1.1 3,288,662 + -0.3 3,288,662 + +0.4 3,288,828 + +0.0 3,289,294 - RR42_RS15185 0.47 +0.8
Or see this region's nucleotide sequence