Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13875

Experiment: Ethanol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ethanol (C)
2,987,448	+		RR42_RS13865	0.31	+0.1
2,987,449	-		RR42_RS13865	0.31	-0.2
2,987,742	+				+0.6
2,987,743	-				-0.1
2,987,743	-				-0.1
2,987,865	+				-0.8
2,987,866	-				+0.9
2,987,897	+				-0.4
2,987,897	+				+1.9
2,987,897	+				+1.8
2,987,898	-				+0.8
2,987,898	-				-0.5
2,987,898	-				-0.4
2,987,898	-				+1.3
2,987,898	-				+0.7
2,987,898	-				-0.1
2,987,898	-				-0.4
2,987,898	-				-0.5
2,987,900	-				-1.4
2,987,930	-				-0.0
2,987,943	+				-0.2
2,987,944	-				-0.9
2,987,944	-				-0.0
2,987,969	+				+0.9
2,988,089	+				+0.3
2,988,089	+				-1.3
2,988,105	-				+0.1
2,988,156	+				+0.3
2,988,156	+				-0.4
2,988,157	-				+1.4
2,988,590	+				-0.6
2,988,590	+				-0.7
2,988,590	+				-1.8
2,988,591	-				+0.8
2,988,591	-				-2.1
2,988,591	-				+0.1
2,988,591	-				-1.0
2,988,591	-				-0.2
2,988,591	-				-2.3
2,988,591	-				-1.2
2,988,591	-				+0.0
2,988,592	+				-0.5
2,988,592	+				-2.5
2,988,592	+				+0.7
2,988,592	+				-0.2
2,988,592	+				-1.9
2,988,592	+				-1.4
2,988,592	+				-0.3
2,988,592	+				-0.2
2,988,592	+				-0.9
2,988,592	+				-1.4
2,988,593	-				-0.7
2,988,593	-				-0.6
2,988,593	-				-1.0
2,988,593	-				-0.3
2,988,593	-				-1.2
2,988,593	-				-0.6
2,988,593	-				-0.1
2,988,593	-				-0.1
2,988,595	+				-0.3
2,988,596	-				+0.3
2,988,760	+		RR42_RS13875	0.18	-1.7
2,988,760	+		RR42_RS13875	0.18	-1.9
2,988,760	+		RR42_RS13875	0.18	+0.5
2,988,760	+		RR42_RS13875	0.18	-0.8
2,988,761	-		RR42_RS13875	0.18	-1.3
2,988,761	-		RR42_RS13875	0.18	-1.6
2,988,761	-		RR42_RS13875	0.18	-1.4
2,988,847	+		RR42_RS13875	0.22	-1.9
2,989,111	+		RR42_RS13875	0.35	-2.7
2,989,112	-		RR42_RS13875	0.35	-1.6
2,989,143	+		RR42_RS13875	0.36	-1.4
2,989,144	+		RR42_RS13875	0.36	-0.2
2,989,144	+		RR42_RS13875	0.36	-1.0
2,989,144	+		RR42_RS13875	0.36	-1.2
2,989,180	+		RR42_RS13875	0.38	-1.5
2,989,180	+		RR42_RS13875	0.38	-1.2
2,989,181	-		RR42_RS13875	0.38	-1.3
2,989,181	-		RR42_RS13875	0.38	-1.8
2,989,249	+		RR42_RS13875	0.41	+0.3
2,989,250	-		RR42_RS13875	0.41	-0.1
2,989,250	-		RR42_RS13875	0.41	-0.5
2,989,443	+		RR42_RS13875	0.51	-1.8
2,989,613	-		RR42_RS13875	0.59	-0.9
2,989,616	-		RR42_RS13875	0.59	-0.3
2,989,693	+		RR42_RS13875	0.63	-1.5
2,989,693	+		RR42_RS13875	0.63	-2.1
2,989,693	+		RR42_RS13875	0.63	-1.0
2,989,693	+		RR42_RS13875	0.63	-0.9
2,989,694	-		RR42_RS13875	0.63	-0.9
2,989,694	-		RR42_RS13875	0.63	-2.4
2,989,694	-		RR42_RS13875	0.63	+0.9
2,989,694	-		RR42_RS13875	0.63	-1.3
2,989,777	+		RR42_RS13875	0.67	-0.4
2,989,777	+		RR42_RS13875	0.67	-0.9
2,989,777	+		RR42_RS13875	0.67	+0.4
2,989,778	-		RR42_RS13875	0.67	-1.1
2,989,906	-		RR42_RS13875	0.73	-1.3
2,989,944	+		RR42_RS13875	0.75	-0.5
2,989,944	+		RR42_RS13875	0.75	+0.3
2,989,944	+		RR42_RS13875	0.75	-0.9
2,989,945	-		RR42_RS13875	0.75	-1.5
2,990,039	-		RR42_RS13875	0.80	-1.1
2,990,060	-		RR42_RS13875	0.81	-2.0
2,990,090	-		RR42_RS13875	0.82	-0.8
2,990,129	-		RR42_RS13875	0.84	-1.1
2,990,235	+		RR42_RS13875	0.89	-1.4
2,990,235	+		RR42_RS13875	0.89	-1.4
2,990,236	-		RR42_RS13875	0.90	-1.1
2,990,236	-		RR42_RS13875	0.90	-0.5
2,990,239	+		RR42_RS13875	0.90	-1.1
2,990,239	+		RR42_RS13875	0.90	-0.4
2,990,239	+		RR42_RS13875	0.90	-3.1
2,990,239	+		RR42_RS13875	0.90	-1.4
2,990,239	+		RR42_RS13875	0.90	-0.5
2,990,240	-		RR42_RS13875	0.90	-1.8
2,990,240	-		RR42_RS13875	0.90	-1.0
2,990,240	-		RR42_RS13875	0.90	-1.0
2,990,240	-		RR42_RS13875	0.90	-0.9
2,990,240	-		RR42_RS13875	0.90	-1.6
2,990,240	-		RR42_RS13875	0.90	-1.7
2,990,240	-		RR42_RS13875	0.90	-0.9
2,990,240	-		RR42_RS13875	0.90	-0.5
2,990,240	-		RR42_RS13875	0.90	-1.1
2,990,242	+		RR42_RS13875	0.90	-1.1
2,990,242	+		RR42_RS13875	0.90	-1.0
2,990,242	+		RR42_RS13875	0.90	-2.4
2,990,243	-		RR42_RS13875	0.90	+0.4
2,990,243	-		RR42_RS13875	0.90	-1.8
2,990,243	-		RR42_RS13875	0.90	-0.6
2,990,243	-		RR42_RS13875	0.90	-1.6
2,990,287	+				-1.7
2,990,287	+				-0.4
2,990,287	+				-3.5
2,990,288	-				-2.0
2,990,288	-				-1.0
2,990,288	-				-1.2
2,990,317	+				-1.6
2,990,372	+				-1.4
2,990,405	-				-0.5
2,990,407	+				-1.2
2,990,408	-				-0.0
2,990,970	+		RR42_RS13880	0.21	-3.4
2,991,012	+		RR42_RS13880	0.23	-1.1
2,991,012	+		RR42_RS13880	0.23	-1.7
2,991,012	+		RR42_RS13880	0.23	-4.8
2,991,013	-		RR42_RS13880	0.23	-2.2
2,991,013	-		RR42_RS13880	0.23	-5.5
2,991,013	-		RR42_RS13880	0.23	-3.9
2,991,013	-		RR42_RS13880	0.23	-4.2
2,991,042	+		RR42_RS13880	0.25	-3.8
2,991,043	-		RR42_RS13880	0.25	-2.5
2,991,043	-		RR42_RS13880	0.25	-0.4
2,991,043	-		RR42_RS13880	0.25	-2.8
2,991,175	+		RR42_RS13880	0.31	-5.1
2,991,309	+		RR42_RS13880	0.38	-0.7
2,991,309	+		RR42_RS13880	0.38	-3.8
2,991,310	-		RR42_RS13880	0.38	-0.0
2,991,310	-		RR42_RS13880	0.38	-3.9
2,991,312	+		RR42_RS13880	0.38	-5.5
2,991,312	+		RR42_RS13880	0.38	-4.7
2,991,312	+		RR42_RS13880	0.38	-2.9
2,991,312	+		RR42_RS13880	0.38	-3.9
2,991,313	-		RR42_RS13880	0.38	-3.0
2,991,313	-		RR42_RS13880	0.38	-3.5
2,991,381	+		RR42_RS13880	0.42	-4.2
2,991,382	-		RR42_RS13880	0.42	-3.4