Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08575 and RR42_RS08580 overlap by 8 nucleotides RR42_RS08580 and RR42_RS08585 overlap by 4 nucleotides RR42_RS08585 and RR42_RS08590 are separated by 14 nucleotides RR42_RS08590 and RR42_RS08595 are separated by 281 nucleotides
RR42_RS08575: RR42_RS08575 - tail protein, at 1,802,917 to 1,803,465
_RS08575
RR42_RS08580: RR42_RS08580 - baseplate assembly protein, at 1,803,458 to 1,804,366
_RS08580
RR42_RS08585: RR42_RS08585 - baseplate assembly protein, at 1,804,363 to 1,804,707
_RS08585
RR42_RS08590: RR42_RS08590 - baseplate assembly protein, at 1,804,722 to 1,805,339
_RS08590
RR42_RS08595: RR42_RS08595 - virion morphogenesis protein, at 1,805,621 to 1,806,067
_RS08595
Position (kb) 1804
1805 Strain fitness (log2 ratio) -2
-1
0
1 at 1803.589 kb on - strand, within RR42_RS08580 at 1803.640 kb on - strand, within RR42_RS08580 at 1803.640 kb on - strand, within RR42_RS08580 at 1803.702 kb on + strand, within RR42_RS08580 at 1803.702 kb on + strand, within RR42_RS08580 at 1803.703 kb on - strand, within RR42_RS08580 at 1803.936 kb on + strand, within RR42_RS08580 at 1803.937 kb on - strand, within RR42_RS08580 at 1803.937 kb on - strand, within RR42_RS08580 at 1804.017 kb on - strand, within RR42_RS08580 at 1804.445 kb on - strand, within RR42_RS08585 at 1804.448 kb on + strand, within RR42_RS08585 at 1804.490 kb on - strand, within RR42_RS08585 at 1804.602 kb on - strand, within RR42_RS08585 at 1804.804 kb on - strand, within RR42_RS08590 at 1804.962 kb on + strand, within RR42_RS08590 at 1805.412 kb on + strand at 1805.412 kb on + strand at 1805.493 kb on + strand at 1805.494 kb on - strand at 1805.594 kb on + strand at 1805.611 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 1,803,589 - RR42_RS08580 0.14 +0.4 1,803,640 - RR42_RS08580 0.20 +0.0 1,803,640 - RR42_RS08580 0.20 +0.1 1,803,702 + RR42_RS08580 0.27 -0.0 1,803,702 + RR42_RS08580 0.27 -0.7 1,803,703 - RR42_RS08580 0.27 +1.7 1,803,936 + RR42_RS08580 0.53 -2.1 1,803,937 - RR42_RS08580 0.53 +0.1 1,803,937 - RR42_RS08580 0.53 -0.5 1,804,017 - RR42_RS08580 0.61 -0.9 1,804,445 - RR42_RS08585 0.24 +1.5 1,804,448 + RR42_RS08585 0.25 +0.3 1,804,490 - RR42_RS08585 0.37 -0.1 1,804,602 - RR42_RS08585 0.69 +0.7 1,804,804 - RR42_RS08590 0.13 +0.4 1,804,962 + RR42_RS08590 0.39 -0.9 1,805,412 + -0.9 1,805,412 + +0.3 1,805,493 + +0.4 1,805,494 - -0.0 1,805,594 + +0.3 1,805,611 + +0.3
Or see this region's nucleotide sequence