Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07060

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07050 and RR42_RS07055 are separated by 284 nucleotidesRR42_RS07055 and RR42_RS07060 overlap by 4 nucleotidesRR42_RS07060 and RR42_RS07065 are separated by 307 nucleotides RR42_RS07050: RR42_RS07050 - hypothetical protein, at 1,511,150 to 1,511,752 _RS07050 RR42_RS07055: RR42_RS07055 - hypothetical protein, at 1,512,037 to 1,512,543 _RS07055 RR42_RS07060: RR42_RS07060 - hypothetical protein, at 1,512,540 to 1,512,755 _RS07060 RR42_RS07065: RR42_RS07065 - hypothetical protein, at 1,513,063 to 1,515,870 _RS07065 Position (kb) 1512 1513Strain fitness (log2 ratio) -1 0 1 2at 1511.547 kb on + strand, within RR42_RS07050at 1511.547 kb on + strand, within RR42_RS07050at 1511.548 kb on - strand, within RR42_RS07050at 1511.585 kb on + strand, within RR42_RS07050at 1511.585 kb on + strand, within RR42_RS07050at 1511.681 kb on - strand, within RR42_RS07050at 1511.681 kb on - strand, within RR42_RS07050at 1511.681 kb on - strand, within RR42_RS07050at 1511.681 kb on - strand, within RR42_RS07050at 1511.681 kb on - strand, within RR42_RS07050at 1511.725 kb on + strandat 1511.785 kb on + strandat 1511.786 kb on - strandat 1511.788 kb on + strandat 1511.789 kb on - strandat 1511.881 kb on - strandat 1512.033 kb on - strandat 1512.041 kb on + strandat 1512.041 kb on + strandat 1512.041 kb on + strandat 1512.042 kb on - strandat 1512.089 kb on + strand, within RR42_RS07055at 1512.089 kb on + strand, within RR42_RS07055at 1512.121 kb on + strand, within RR42_RS07055at 1512.121 kb on + strand, within RR42_RS07055at 1512.331 kb on + strand, within RR42_RS07055at 1512.331 kb on + strand, within RR42_RS07055at 1512.332 kb on - strand, within RR42_RS07055at 1512.332 kb on - strand, within RR42_RS07055at 1512.332 kb on - strand, within RR42_RS07055at 1512.332 kb on - strand, within RR42_RS07055at 1512.403 kb on + strand, within RR42_RS07055at 1512.414 kb on - strand, within RR42_RS07055at 1512.437 kb on - strand, within RR42_RS07055at 1512.445 kb on - strand, within RR42_RS07055at 1512.520 kb on + strandat 1512.520 kb on + strandat 1512.521 kb on - strandat 1512.521 kb on - strandat 1512.521 kb on - strandat 1512.596 kb on - strand, within RR42_RS07060at 1512.619 kb on - strand, within RR42_RS07060at 1512.619 kb on - strand, within RR42_RS07060at 1512.719 kb on - strand, within RR42_RS07060at 1512.756 kb on - strandat 1512.756 kb on - strandat 1512.756 kb on - strandat 1512.823 kb on + strandat 1512.823 kb on + strandat 1512.824 kb on - strandat 1512.833 kb on - strandat 1512.935 kb on - strandat 1512.984 kb on - strandat 1513.055 kb on + strandat 1513.152 kb on - strandat 1513.153 kb on + strandat 1513.154 kb on - strandat 1513.154 kb on - strandat 1513.297 kb on - strandat 1513.451 kb on - strand, within RR42_RS07065at 1513.452 kb on + strand, within RR42_RS07065at 1513.498 kb on - strand, within RR42_RS07065at 1513.621 kb on + strand, within RR42_RS07065at 1513.621 kb on + strand, within RR42_RS07065at 1513.633 kb on + strand, within RR42_RS07065at 1513.713 kb on + strand, within RR42_RS07065at 1513.713 kb on + strand, within RR42_RS07065

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,511,547 + RR42_RS07050 0.66 -0.4
1,511,547 + RR42_RS07050 0.66 +0.6
1,511,548 - RR42_RS07050 0.66 -1.3
1,511,585 + RR42_RS07050 0.72 -0.1
1,511,585 + RR42_RS07050 0.72 +0.4
1,511,681 - RR42_RS07050 0.88 +0.6
1,511,681 - RR42_RS07050 0.88 +0.2
1,511,681 - RR42_RS07050 0.88 -0.1
1,511,681 - RR42_RS07050 0.88 -1.7
1,511,681 - RR42_RS07050 0.88 +0.5
1,511,725 + +0.1
1,511,785 + -0.2
1,511,786 - -0.2
1,511,788 + -0.4
1,511,789 - -0.3
1,511,881 - -0.4
1,512,033 - +2.4
1,512,041 + +0.5
1,512,041 + -0.1
1,512,041 + +0.5
1,512,042 - -0.8
1,512,089 + RR42_RS07055 0.10 +0.1
1,512,089 + RR42_RS07055 0.10 +0.6
1,512,121 + RR42_RS07055 0.17 -1.1
1,512,121 + RR42_RS07055 0.17 +1.0
1,512,331 + RR42_RS07055 0.58 -0.0
1,512,331 + RR42_RS07055 0.58 +1.1
1,512,332 - RR42_RS07055 0.58 -0.4
1,512,332 - RR42_RS07055 0.58 +0.4
1,512,332 - RR42_RS07055 0.58 +0.0
1,512,332 - RR42_RS07055 0.58 +0.9
1,512,403 + RR42_RS07055 0.72 +0.1
1,512,414 - RR42_RS07055 0.74 +0.2
1,512,437 - RR42_RS07055 0.79 -1.0
1,512,445 - RR42_RS07055 0.80 +1.1
1,512,520 + -0.7
1,512,520 + +0.4
1,512,521 - -0.6
1,512,521 - +0.3
1,512,521 - -1.5
1,512,596 - RR42_RS07060 0.26 -0.3
1,512,619 - RR42_RS07060 0.37 -1.1
1,512,619 - RR42_RS07060 0.37 -1.1
1,512,719 - RR42_RS07060 0.83 +0.4
1,512,756 - +0.8
1,512,756 - -0.8
1,512,756 - +0.4
1,512,823 + -0.2
1,512,823 + -0.2
1,512,824 - +0.1
1,512,833 - -1.0
1,512,935 - -0.9
1,512,984 - +0.3
1,513,055 + -0.2
1,513,152 - +0.9
1,513,153 + -0.7
1,513,154 - +0.2
1,513,154 - +0.1
1,513,297 - -1.0
1,513,451 - RR42_RS07065 0.14 -0.9
1,513,452 + RR42_RS07065 0.14 +1.1
1,513,498 - RR42_RS07065 0.15 +0.5
1,513,621 + RR42_RS07065 0.20 +2.2
1,513,621 + RR42_RS07065 0.20 -0.1
1,513,633 + RR42_RS07065 0.20 -0.1
1,513,713 + RR42_RS07065 0.23 +0.5
1,513,713 + RR42_RS07065 0.23 -0.4

Or see this region's nucleotide sequence