Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06165 and RR42_RS06170 are separated by 90 nucleotides RR42_RS06170 and RR42_RS06175 are separated by 113 nucleotides RR42_RS06175 and RR42_RS06180 are separated by 83 nucleotides RR42_RS06180 and RR42_RS06185 are separated by 123 nucleotides
RR42_RS06165: RR42_RS06165 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,355,211 to 1,356,083
_RS06165
RR42_RS06170: RR42_RS06170 - hypothetical protein, at 1,356,174 to 1,356,464
_RS06170
RR42_RS06175: RR42_RS06175 - enolase, at 1,356,578 to 1,357,867
_RS06175
RR42_RS06180: RR42_RS06180 - cell division protein FtsB, at 1,357,951 to 1,358,289
_RS06180
RR42_RS06185: RR42_RS06185 - hypothetical protein, at 1,358,413 to 1,358,814
_RS06185
Position (kb)
1356
1357
1358 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1356.138 kb on + strand at 1356.152 kb on + strand at 1356.152 kb on + strand at 1356.152 kb on + strand at 1356.186 kb on + strand at 1356.187 kb on - strand at 1356.187 kb on - strand at 1356.187 kb on - strand at 1356.189 kb on - strand at 1356.234 kb on + strand, within RR42_RS06170 at 1356.280 kb on + strand, within RR42_RS06170 at 1356.280 kb on + strand, within RR42_RS06170 at 1356.360 kb on + strand, within RR42_RS06170 at 1356.360 kb on + strand, within RR42_RS06170 at 1356.528 kb on + strand at 1356.531 kb on + strand at 1356.531 kb on + strand at 1357.853 kb on + strand at 1357.854 kb on - strand at 1358.287 kb on + strand at 1358.287 kb on + strand at 1358.405 kb on - strand at 1358.414 kb on + strand at 1358.414 kb on + strand at 1358.414 kb on + strand at 1358.424 kb on - strand at 1358.514 kb on - strand, within RR42_RS06185 at 1358.526 kb on + strand, within RR42_RS06185 at 1358.527 kb on - strand, within RR42_RS06185 at 1358.543 kb on + strand, within RR42_RS06185 at 1358.543 kb on + strand, within RR42_RS06185 at 1358.543 kb on + strand, within RR42_RS06185 at 1358.543 kb on + strand, within RR42_RS06185 at 1358.543 kb on + strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.546 kb on + strand, within RR42_RS06185 at 1358.546 kb on + strand, within RR42_RS06185 at 1358.546 kb on + strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.614 kb on + strand, within RR42_RS06185 at 1358.615 kb on - strand, within RR42_RS06185
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 1,356,138 + -0.3 1,356,152 + +0.3 1,356,152 + -1.5 1,356,152 + +0.3 1,356,186 + -1.4 1,356,187 - +3.2 1,356,187 - +0.3 1,356,187 - +0.7 1,356,189 - -0.1 1,356,234 + RR42_RS06170 0.21 +0.1 1,356,280 + RR42_RS06170 0.36 -0.1 1,356,280 + RR42_RS06170 0.36 -0.7 1,356,360 + RR42_RS06170 0.64 -0.2 1,356,360 + RR42_RS06170 0.64 +0.4 1,356,528 + -1.8 1,356,531 + +0.2 1,356,531 + -1.0 1,357,853 + -1.1 1,357,854 - -0.6 1,358,287 + -0.1 1,358,287 + -0.5 1,358,405 - -0.0 1,358,414 + -0.4 1,358,414 + -0.4 1,358,414 + +0.2 1,358,424 - +0.5 1,358,514 - RR42_RS06185 0.25 +0.5 1,358,526 + RR42_RS06185 0.28 -0.1 1,358,527 - RR42_RS06185 0.28 +0.4 1,358,543 + RR42_RS06185 0.32 +0.7 1,358,543 + RR42_RS06185 0.32 -0.2 1,358,543 + RR42_RS06185 0.32 +1.5 1,358,543 + RR42_RS06185 0.32 -0.2 1,358,543 + RR42_RS06185 0.32 -1.5 1,358,544 - RR42_RS06185 0.33 +0.1 1,358,544 - RR42_RS06185 0.33 -1.3 1,358,544 - RR42_RS06185 0.33 +1.3 1,358,544 - RR42_RS06185 0.33 -0.4 1,358,544 - RR42_RS06185 0.33 -0.4 1,358,544 - RR42_RS06185 0.33 +0.2 1,358,546 + RR42_RS06185 0.33 -0.4 1,358,546 + RR42_RS06185 0.33 +0.4 1,358,546 + RR42_RS06185 0.33 +1.2 1,358,547 - RR42_RS06185 0.33 -0.0 1,358,547 - RR42_RS06185 0.33 -1.5 1,358,547 - RR42_RS06185 0.33 +0.1 1,358,547 - RR42_RS06185 0.33 +1.0 1,358,547 - RR42_RS06185 0.33 +0.1 1,358,547 - RR42_RS06185 0.33 -0.4 1,358,547 - RR42_RS06185 0.33 -0.2 1,358,614 + RR42_RS06185 0.50 +0.3 1,358,615 - RR42_RS06185 0.50 +0.2
Or see this region's nucleotide sequence