Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05625

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05615 and RR42_RS05620 are separated by 9 nucleotidesRR42_RS05620 and RR42_RS05625 are separated by 181 nucleotidesRR42_RS05625 and RR42_RS05630 are separated by 345 nucleotides RR42_RS05615: RR42_RS05615 - MFS transporter, at 1,235,458 to 1,236,759 _RS05615 RR42_RS05620: RR42_RS05620 - esterase, at 1,236,769 to 1,237,527 _RS05620 RR42_RS05625: RR42_RS05625 - 4-hydroxyacetophenone monooxygenase, at 1,237,709 to 1,239,196 _RS05625 RR42_RS05630: RR42_RS05630 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,239,542 to 1,240,807 _RS05630 Position (kb) 1237 1238 1239 1240Strain fitness (log2 ratio) -1 0 1 2at 1236.740 kb on + strandat 1236.740 kb on + strandat 1236.740 kb on + strandat 1236.741 kb on - strandat 1236.753 kb on + strandat 1236.902 kb on + strand, within RR42_RS05620at 1236.902 kb on + strand, within RR42_RS05620at 1237.323 kb on - strand, within RR42_RS05620at 1237.711 kb on - strandat 1237.711 kb on - strandat 1237.776 kb on + strandat 1237.777 kb on - strandat 1237.831 kb on - strandat 1238.023 kb on + strand, within RR42_RS05625at 1238.024 kb on - strand, within RR42_RS05625at 1238.079 kb on + strand, within RR42_RS05625at 1238.079 kb on + strand, within RR42_RS05625at 1238.079 kb on + strand, within RR42_RS05625at 1238.144 kb on - strand, within RR42_RS05625at 1238.391 kb on + strand, within RR42_RS05625at 1238.539 kb on + strand, within RR42_RS05625at 1238.539 kb on + strand, within RR42_RS05625at 1238.539 kb on + strand, within RR42_RS05625at 1238.539 kb on + strand, within RR42_RS05625at 1238.540 kb on - strand, within RR42_RS05625at 1238.540 kb on - strand, within RR42_RS05625at 1238.540 kb on - strand, within RR42_RS05625at 1238.540 kb on - strand, within RR42_RS05625at 1238.540 kb on - strand, within RR42_RS05625at 1238.540 kb on - strand, within RR42_RS05625at 1238.541 kb on + strand, within RR42_RS05625at 1238.588 kb on + strand, within RR42_RS05625at 1238.856 kb on + strand, within RR42_RS05625at 1238.890 kb on + strand, within RR42_RS05625at 1238.932 kb on - strand, within RR42_RS05625at 1238.959 kb on - strand, within RR42_RS05625at 1238.998 kb on + strand, within RR42_RS05625at 1238.999 kb on - strand, within RR42_RS05625at 1238.999 kb on - strand, within RR42_RS05625at 1239.000 kb on + strand, within RR42_RS05625at 1239.219 kb on + strandat 1239.275 kb on + strandat 1239.387 kb on + strandat 1239.450 kb on + strandat 1239.451 kb on - strandat 1239.451 kb on - strandat 1239.452 kb on + strandat 1239.452 kb on + strandat 1239.452 kb on + strandat 1239.477 kb on + strandat 1239.477 kb on + strandat 1239.478 kb on - strandat 1239.478 kb on - strandat 1239.845 kb on - strand, within RR42_RS05630at 1239.933 kb on - strand, within RR42_RS05630at 1239.945 kb on - strand, within RR42_RS05630at 1239.977 kb on + strand, within RR42_RS05630at 1240.079 kb on + strand, within RR42_RS05630at 1240.079 kb on + strand, within RR42_RS05630at 1240.080 kb on - strand, within RR42_RS05630

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,236,740 + +0.1
1,236,740 + +0.6
1,236,740 + -0.0
1,236,741 - +0.2
1,236,753 + -0.9
1,236,902 + RR42_RS05620 0.18 +0.0
1,236,902 + RR42_RS05620 0.18 +1.4
1,237,323 - RR42_RS05620 0.73 +0.3
1,237,711 - +0.3
1,237,711 - +2.1
1,237,776 + -0.8
1,237,777 - -0.7
1,237,831 - -0.2
1,238,023 + RR42_RS05625 0.21 +0.1
1,238,024 - RR42_RS05625 0.21 +0.5
1,238,079 + RR42_RS05625 0.25 -0.1
1,238,079 + RR42_RS05625 0.25 +0.3
1,238,079 + RR42_RS05625 0.25 -0.6
1,238,144 - RR42_RS05625 0.29 +0.5
1,238,391 + RR42_RS05625 0.46 -0.0
1,238,539 + RR42_RS05625 0.56 -0.2
1,238,539 + RR42_RS05625 0.56 -0.4
1,238,539 + RR42_RS05625 0.56 +0.5
1,238,539 + RR42_RS05625 0.56 -0.9
1,238,540 - RR42_RS05625 0.56 -0.1
1,238,540 - RR42_RS05625 0.56 +0.6
1,238,540 - RR42_RS05625 0.56 -0.0
1,238,540 - RR42_RS05625 0.56 +0.7
1,238,540 - RR42_RS05625 0.56 -0.6
1,238,540 - RR42_RS05625 0.56 +0.1
1,238,541 + RR42_RS05625 0.56 +0.9
1,238,588 + RR42_RS05625 0.59 -0.5
1,238,856 + RR42_RS05625 0.77 +0.2
1,238,890 + RR42_RS05625 0.79 -0.0
1,238,932 - RR42_RS05625 0.82 -0.6
1,238,959 - RR42_RS05625 0.84 -0.8
1,238,998 + RR42_RS05625 0.87 -0.2
1,238,999 - RR42_RS05625 0.87 +1.6
1,238,999 - RR42_RS05625 0.87 +0.2
1,239,000 + RR42_RS05625 0.87 -1.1
1,239,219 + -0.4
1,239,275 + -0.9
1,239,387 + -0.4
1,239,450 + +0.2
1,239,451 - -1.0
1,239,451 - -0.9
1,239,452 + +0.1
1,239,452 + -0.1
1,239,452 + -0.6
1,239,477 + +1.9
1,239,477 + -0.2
1,239,478 - -0.5
1,239,478 - +1.0
1,239,845 - RR42_RS05630 0.24 -1.3
1,239,933 - RR42_RS05630 0.31 -1.2
1,239,945 - RR42_RS05630 0.32 -0.6
1,239,977 + RR42_RS05630 0.34 +0.6
1,240,079 + RR42_RS05630 0.42 -0.8
1,240,079 + RR42_RS05630 0.42 +0.2
1,240,080 - RR42_RS05630 0.42 +0.2

Or see this region's nucleotide sequence