Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05195

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05185 and RR42_RS05190 are separated by 29 nucleotidesRR42_RS05190 and RR42_RS05195 are separated by 68 nucleotidesRR42_RS05195 and RR42_RS05200 are separated by 134 nucleotides RR42_RS05185: RR42_RS05185 - transposase, at 1,143,503 to 1,143,907 _RS05185 RR42_RS05190: RR42_RS05190 - hypothetical protein, at 1,143,937 to 1,144,746 _RS05190 RR42_RS05195: RR42_RS05195 - fructose 1,6-bisphosphatase, at 1,144,815 to 1,145,831 _RS05195 RR42_RS05200: RR42_RS05200 - aminopeptidase N, at 1,145,966 to 1,148,665 _RS05200 Position (kb) 1144 1145 1146Strain fitness (log2 ratio) -1 0 1 2at 1144.777 kb on + strandat 1144.777 kb on + strandat 1145.861 kb on - strandat 1145.861 kb on - strandat 1145.861 kb on - strandat 1145.905 kb on + strandat 1146.075 kb on + strandat 1146.504 kb on + strand, within RR42_RS05200at 1146.505 kb on - strand, within RR42_RS05200at 1146.505 kb on - strand, within RR42_RS05200at 1146.555 kb on + strand, within RR42_RS05200at 1146.747 kb on + strand, within RR42_RS05200

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,144,777 + -1.0
1,144,777 + +0.3
1,145,861 - +0.8
1,145,861 - +0.2
1,145,861 - +0.3
1,145,905 + +0.1
1,146,075 + +0.1
1,146,504 + RR42_RS05200 0.20 -0.3
1,146,505 - RR42_RS05200 0.20 +0.5
1,146,505 - RR42_RS05200 0.20 +2.3
1,146,555 + RR42_RS05200 0.22 +0.6
1,146,747 + RR42_RS05200 0.29 +0.0

Or see this region's nucleotide sequence