Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05040 and RR42_RS05045 are separated by 248 nucleotides RR42_RS05045 and RR42_RS05050 are separated by 606 nucleotides
RR42_RS05040: RR42_RS05040 - gamma-glutamyltransferase, at 1,113,287 to 1,115,266
_RS05040
RR42_RS05045: RR42_RS05045 - hypothetical protein, at 1,115,515 to 1,116,078
_RS05045
RR42_RS05050: RR42_RS05050 - transcriptional regulator, at 1,116,685 to 1,117,455
_RS05050
Position (kb)
1115
1116
1117 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1114.515 kb on - strand, within RR42_RS05040 at 1114.655 kb on + strand, within RR42_RS05040 at 1114.655 kb on + strand, within RR42_RS05040 at 1114.656 kb on - strand, within RR42_RS05040 at 1114.656 kb on - strand, within RR42_RS05040 at 1114.656 kb on - strand, within RR42_RS05040 at 1114.706 kb on + strand, within RR42_RS05040 at 1114.707 kb on - strand, within RR42_RS05040 at 1114.707 kb on - strand, within RR42_RS05040 at 1114.884 kb on - strand, within RR42_RS05040 at 1114.884 kb on - strand, within RR42_RS05040 at 1114.926 kb on - strand, within RR42_RS05040 at 1114.929 kb on + strand, within RR42_RS05040 at 1115.179 kb on + strand at 1115.179 kb on + strand at 1115.251 kb on + strand at 1115.251 kb on + strand at 1115.251 kb on + strand at 1115.252 kb on - strand at 1115.252 kb on - strand at 1115.264 kb on + strand at 1115.264 kb on + strand at 1115.322 kb on - strand at 1115.357 kb on + strand at 1115.357 kb on + strand at 1115.357 kb on + strand at 1115.358 kb on - strand at 1115.358 kb on - strand at 1115.468 kb on + strand at 1115.468 kb on + strand at 1115.468 kb on + strand at 1115.517 kb on - strand at 1115.582 kb on + strand, within RR42_RS05045 at 1115.582 kb on + strand, within RR42_RS05045 at 1115.744 kb on + strand at 1115.745 kb on - strand, within RR42_RS05045 at 1115.745 kb on - strand, within RR42_RS05045 at 1115.745 kb on - strand, within RR42_RS05045 at 1115.847 kb on - strand, within RR42_RS05045 at 1116.044 kb on + strand at 1116.068 kb on + strand at 1116.186 kb on - strand at 1116.186 kb on - strand at 1116.306 kb on + strand at 1116.306 kb on + strand at 1116.307 kb on - strand at 1116.307 kb on - strand at 1116.318 kb on + strand at 1116.371 kb on + strand at 1116.371 kb on + strand at 1116.371 kb on + strand at 1116.372 kb on - strand at 1116.372 kb on - strand at 1116.372 kb on - strand at 1116.463 kb on + strand at 1116.464 kb on - strand at 1116.464 kb on - strand at 1117.005 kb on - strand, within RR42_RS05050
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 1,114,515 - RR42_RS05040 0.62 -0.1 1,114,655 + RR42_RS05040 0.69 -0.1 1,114,655 + RR42_RS05040 0.69 -1.9 1,114,656 - RR42_RS05040 0.69 -0.1 1,114,656 - RR42_RS05040 0.69 +0.6 1,114,656 - RR42_RS05040 0.69 +0.1 1,114,706 + RR42_RS05040 0.72 +0.4 1,114,707 - RR42_RS05040 0.72 +0.7 1,114,707 - RR42_RS05040 0.72 -0.1 1,114,884 - RR42_RS05040 0.81 +0.3 1,114,884 - RR42_RS05040 0.81 +0.5 1,114,926 - RR42_RS05040 0.83 -1.0 1,114,929 + RR42_RS05040 0.83 -1.3 1,115,179 + +0.6 1,115,179 + +0.4 1,115,251 + -0.4 1,115,251 + +0.9 1,115,251 + -0.2 1,115,252 - +0.5 1,115,252 - +0.0 1,115,264 + -0.4 1,115,264 + +0.4 1,115,322 - +1.1 1,115,357 + +0.3 1,115,357 + -0.6 1,115,357 + -1.1 1,115,358 - -0.1 1,115,358 - +0.2 1,115,468 + -0.3 1,115,468 + +0.0 1,115,468 + +0.0 1,115,517 - -0.4 1,115,582 + RR42_RS05045 0.12 +0.0 1,115,582 + RR42_RS05045 0.12 +2.8 1,115,744 + -0.4 1,115,745 - RR42_RS05045 0.41 +0.6 1,115,745 - RR42_RS05045 0.41 +0.8 1,115,745 - RR42_RS05045 0.41 -0.1 1,115,847 - RR42_RS05045 0.59 +0.7 1,116,044 + -0.8 1,116,068 + -1.6 1,116,186 - +2.5 1,116,186 - +0.2 1,116,306 + -0.1 1,116,306 + +0.9 1,116,307 - -0.4 1,116,307 - -0.5 1,116,318 + +0.2 1,116,371 + +0.3 1,116,371 + -1.6 1,116,371 + +0.0 1,116,372 - -0.1 1,116,372 - -0.1 1,116,372 - +1.9 1,116,463 + -1.2 1,116,464 - +0.2 1,116,464 - +0.7 1,117,005 - RR42_RS05050 0.42 +0.3
Or see this region's nucleotide sequence