Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05045

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05040 and RR42_RS05045 are separated by 248 nucleotidesRR42_RS05045 and RR42_RS05050 are separated by 606 nucleotides RR42_RS05040: RR42_RS05040 - gamma-glutamyltransferase, at 1,113,287 to 1,115,266 _RS05040 RR42_RS05045: RR42_RS05045 - hypothetical protein, at 1,115,515 to 1,116,078 _RS05045 RR42_RS05050: RR42_RS05050 - transcriptional regulator, at 1,116,685 to 1,117,455 _RS05050 Position (kb) 1115 1116 1117Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1114.515 kb on - strand, within RR42_RS05040at 1114.655 kb on + strand, within RR42_RS05040at 1114.655 kb on + strand, within RR42_RS05040at 1114.656 kb on - strand, within RR42_RS05040at 1114.656 kb on - strand, within RR42_RS05040at 1114.656 kb on - strand, within RR42_RS05040at 1114.706 kb on + strand, within RR42_RS05040at 1114.707 kb on - strand, within RR42_RS05040at 1114.707 kb on - strand, within RR42_RS05040at 1114.884 kb on - strand, within RR42_RS05040at 1114.884 kb on - strand, within RR42_RS05040at 1114.926 kb on - strand, within RR42_RS05040at 1114.929 kb on + strand, within RR42_RS05040at 1115.179 kb on + strandat 1115.179 kb on + strandat 1115.251 kb on + strandat 1115.251 kb on + strandat 1115.251 kb on + strandat 1115.252 kb on - strandat 1115.252 kb on - strandat 1115.264 kb on + strandat 1115.264 kb on + strandat 1115.322 kb on - strandat 1115.357 kb on + strandat 1115.357 kb on + strandat 1115.357 kb on + strandat 1115.358 kb on - strandat 1115.358 kb on - strandat 1115.468 kb on + strandat 1115.468 kb on + strandat 1115.468 kb on + strandat 1115.517 kb on - strandat 1115.582 kb on + strand, within RR42_RS05045at 1115.582 kb on + strand, within RR42_RS05045at 1115.744 kb on + strandat 1115.745 kb on - strand, within RR42_RS05045at 1115.745 kb on - strand, within RR42_RS05045at 1115.745 kb on - strand, within RR42_RS05045at 1115.847 kb on - strand, within RR42_RS05045at 1116.044 kb on + strandat 1116.068 kb on + strandat 1116.186 kb on - strandat 1116.186 kb on - strandat 1116.306 kb on + strandat 1116.306 kb on + strandat 1116.307 kb on - strandat 1116.307 kb on - strandat 1116.318 kb on + strandat 1116.371 kb on + strandat 1116.371 kb on + strandat 1116.371 kb on + strandat 1116.372 kb on - strandat 1116.372 kb on - strandat 1116.372 kb on - strandat 1116.463 kb on + strandat 1116.464 kb on - strandat 1116.464 kb on - strandat 1117.005 kb on - strand, within RR42_RS05050

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,114,515 - RR42_RS05040 0.62 -0.1
1,114,655 + RR42_RS05040 0.69 -0.1
1,114,655 + RR42_RS05040 0.69 -1.9
1,114,656 - RR42_RS05040 0.69 -0.1
1,114,656 - RR42_RS05040 0.69 +0.6
1,114,656 - RR42_RS05040 0.69 +0.1
1,114,706 + RR42_RS05040 0.72 +0.4
1,114,707 - RR42_RS05040 0.72 +0.7
1,114,707 - RR42_RS05040 0.72 -0.1
1,114,884 - RR42_RS05040 0.81 +0.3
1,114,884 - RR42_RS05040 0.81 +0.5
1,114,926 - RR42_RS05040 0.83 -1.0
1,114,929 + RR42_RS05040 0.83 -1.3
1,115,179 + +0.6
1,115,179 + +0.4
1,115,251 + -0.4
1,115,251 + +0.9
1,115,251 + -0.2
1,115,252 - +0.5
1,115,252 - +0.0
1,115,264 + -0.4
1,115,264 + +0.4
1,115,322 - +1.1
1,115,357 + +0.3
1,115,357 + -0.6
1,115,357 + -1.1
1,115,358 - -0.1
1,115,358 - +0.2
1,115,468 + -0.3
1,115,468 + +0.0
1,115,468 + +0.0
1,115,517 - -0.4
1,115,582 + RR42_RS05045 0.12 +0.0
1,115,582 + RR42_RS05045 0.12 +2.8
1,115,744 + -0.4
1,115,745 - RR42_RS05045 0.41 +0.6
1,115,745 - RR42_RS05045 0.41 +0.8
1,115,745 - RR42_RS05045 0.41 -0.1
1,115,847 - RR42_RS05045 0.59 +0.7
1,116,044 + -0.8
1,116,068 + -1.6
1,116,186 - +2.5
1,116,186 - +0.2
1,116,306 + -0.1
1,116,306 + +0.9
1,116,307 - -0.4
1,116,307 - -0.5
1,116,318 + +0.2
1,116,371 + +0.3
1,116,371 + -1.6
1,116,371 + +0.0
1,116,372 - -0.1
1,116,372 - -0.1
1,116,372 - +1.9
1,116,463 + -1.2
1,116,464 - +0.2
1,116,464 - +0.7
1,117,005 - RR42_RS05050 0.42 +0.3

Or see this region's nucleotide sequence