Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04880

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04870 and RR42_RS04875 are separated by 294 nucleotidesRR42_RS04875 and RR42_RS04880 are separated by 74 nucleotidesRR42_RS04880 and RR42_RS04885 overlap by 4 nucleotidesRR42_RS04885 and RR42_RS04890 are separated by 13 nucleotides RR42_RS04870: RR42_RS04870 - tRNA-Ser, at 1,081,862 to 1,081,951 _RS04870 RR42_RS04875: RR42_RS04875 - membrane protein, at 1,082,246 to 1,082,752 _RS04875 RR42_RS04880: RR42_RS04880 - coproporphyrinogen III oxidase, at 1,082,827 to 1,084,077 _RS04880 RR42_RS04885: RR42_RS04885 - nucleoside-triphosphate diphosphatase, at 1,084,074 to 1,084,691 _RS04885 RR42_RS04890: RR42_RS04890 - ribonuclease PH, at 1,084,705 to 1,085,424 _RS04890 Position (kb) 1082 1083 1084 1085Strain fitness (log2 ratio) -2 -1 0 1 2at 1081.827 kb on + strandat 1081.827 kb on + strandat 1081.828 kb on - strandat 1081.828 kb on - strandat 1081.961 kb on - strandat 1081.961 kb on - strandat 1082.052 kb on + strandat 1082.052 kb on + strandat 1082.052 kb on + strandat 1082.052 kb on + strandat 1082.053 kb on - strandat 1082.053 kb on - strandat 1082.149 kb on + strandat 1082.149 kb on + strandat 1082.149 kb on + strandat 1082.149 kb on + strandat 1082.150 kb on - strandat 1082.150 kb on - strandat 1082.152 kb on + strandat 1082.152 kb on + strandat 1082.152 kb on + strandat 1082.153 kb on - strandat 1082.153 kb on - strandat 1082.153 kb on - strandat 1082.357 kb on + strand, within RR42_RS04875at 1082.357 kb on + strand, within RR42_RS04875at 1082.394 kb on - strand, within RR42_RS04875at 1082.394 kb on - strand, within RR42_RS04875at 1082.394 kb on - strand, within RR42_RS04875at 1082.394 kb on - strand, within RR42_RS04875at 1082.394 kb on - strand, within RR42_RS04875at 1082.420 kb on + strand, within RR42_RS04875at 1082.420 kb on + strand, within RR42_RS04875at 1082.421 kb on - strand, within RR42_RS04875at 1082.421 kb on - strand, within RR42_RS04875at 1082.627 kb on - strand, within RR42_RS04875at 1082.627 kb on - strand, within RR42_RS04875at 1082.747 kb on + strandat 1083.105 kb on + strand, within RR42_RS04880at 1083.105 kb on + strand, within RR42_RS04880at 1083.107 kb on + strand, within RR42_RS04880at 1083.108 kb on - strand, within RR42_RS04880at 1083.108 kb on - strand, within RR42_RS04880at 1083.194 kb on + strand, within RR42_RS04880at 1083.195 kb on - strand, within RR42_RS04880at 1083.212 kb on + strand, within RR42_RS04880at 1083.267 kb on - strand, within RR42_RS04880at 1083.275 kb on + strand, within RR42_RS04880at 1083.320 kb on + strand, within RR42_RS04880at 1083.320 kb on + strand, within RR42_RS04880at 1083.320 kb on + strand, within RR42_RS04880at 1083.320 kb on + strand, within RR42_RS04880at 1083.392 kb on + strand, within RR42_RS04880at 1083.393 kb on - strand, within RR42_RS04880at 1083.393 kb on - strand, within RR42_RS04880at 1083.477 kb on - strand, within RR42_RS04880at 1083.809 kb on - strand, within RR42_RS04880at 1083.854 kb on + strand, within RR42_RS04880at 1083.920 kb on + strand, within RR42_RS04880at 1083.949 kb on - strand, within RR42_RS04880at 1083.957 kb on - strandat 1084.222 kb on + strand, within RR42_RS04885at 1084.333 kb on + strand, within RR42_RS04885at 1084.333 kb on + strand, within RR42_RS04885at 1084.334 kb on - strand, within RR42_RS04885at 1084.334 kb on - strand, within RR42_RS04885at 1084.336 kb on + strand, within RR42_RS04885at 1084.336 kb on + strand, within RR42_RS04885at 1084.337 kb on - strand, within RR42_RS04885at 1084.337 kb on - strand, within RR42_RS04885at 1084.337 kb on - strand, within RR42_RS04885at 1084.337 kb on - strand, within RR42_RS04885at 1084.337 kb on - strand, within RR42_RS04885at 1084.339 kb on + strand, within RR42_RS04885at 1084.340 kb on - strand, within RR42_RS04885at 1084.340 kb on - strand, within RR42_RS04885at 1084.442 kb on - strand, within RR42_RS04885at 1084.704 kb on - strandat 1084.895 kb on + strand, within RR42_RS04890at 1084.896 kb on - strand, within RR42_RS04890

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,081,827 + -1.1
1,081,827 + +0.4
1,081,828 - +1.0
1,081,828 - -0.3
1,081,961 - -0.5
1,081,961 - -0.8
1,082,052 + -1.0
1,082,052 + -0.5
1,082,052 + +1.3
1,082,052 + +1.0
1,082,053 - -0.2
1,082,053 - +0.3
1,082,149 + -1.0
1,082,149 + -0.4
1,082,149 + -0.2
1,082,149 + +0.3
1,082,150 - +0.1
1,082,150 - -1.0
1,082,152 + +0.0
1,082,152 + +0.6
1,082,152 + +1.0
1,082,153 - -0.8
1,082,153 - +0.4
1,082,153 - +0.1
1,082,357 + RR42_RS04875 0.22 +0.4
1,082,357 + RR42_RS04875 0.22 -2.2
1,082,394 - RR42_RS04875 0.29 -0.2
1,082,394 - RR42_RS04875 0.29 +0.7
1,082,394 - RR42_RS04875 0.29 +1.4
1,082,394 - RR42_RS04875 0.29 +0.2
1,082,394 - RR42_RS04875 0.29 +0.6
1,082,420 + RR42_RS04875 0.34 -0.3
1,082,420 + RR42_RS04875 0.34 -0.1
1,082,421 - RR42_RS04875 0.35 +0.3
1,082,421 - RR42_RS04875 0.35 -0.6
1,082,627 - RR42_RS04875 0.75 -0.7
1,082,627 - RR42_RS04875 0.75 -2.5
1,082,747 + -2.6
1,083,105 + RR42_RS04880 0.22 -1.6
1,083,105 + RR42_RS04880 0.22 -1.2
1,083,107 + RR42_RS04880 0.22 -0.9
1,083,108 - RR42_RS04880 0.22 -0.0
1,083,108 - RR42_RS04880 0.22 -2.4
1,083,194 + RR42_RS04880 0.29 -0.2
1,083,195 - RR42_RS04880 0.29 -0.7
1,083,212 + RR42_RS04880 0.31 -0.9
1,083,267 - RR42_RS04880 0.35 -0.2
1,083,275 + RR42_RS04880 0.36 -0.9
1,083,320 + RR42_RS04880 0.39 +0.1
1,083,320 + RR42_RS04880 0.39 +2.6
1,083,320 + RR42_RS04880 0.39 -0.3
1,083,320 + RR42_RS04880 0.39 -1.4
1,083,392 + RR42_RS04880 0.45 -2.0
1,083,393 - RR42_RS04880 0.45 -0.7
1,083,393 - RR42_RS04880 0.45 -1.6
1,083,477 - RR42_RS04880 0.52 -0.4
1,083,809 - RR42_RS04880 0.78 +0.2
1,083,854 + RR42_RS04880 0.82 -0.4
1,083,920 + RR42_RS04880 0.87 -0.8
1,083,949 - RR42_RS04880 0.90 -1.8
1,083,957 - -1.7
1,084,222 + RR42_RS04885 0.24 -0.3
1,084,333 + RR42_RS04885 0.42 +0.2
1,084,333 + RR42_RS04885 0.42 -0.6
1,084,334 - RR42_RS04885 0.42 -0.9
1,084,334 - RR42_RS04885 0.42 -0.5
1,084,336 + RR42_RS04885 0.42 -1.6
1,084,336 + RR42_RS04885 0.42 +0.0
1,084,337 - RR42_RS04885 0.43 +1.6
1,084,337 - RR42_RS04885 0.43 -0.6
1,084,337 - RR42_RS04885 0.43 -0.4
1,084,337 - RR42_RS04885 0.43 +0.4
1,084,337 - RR42_RS04885 0.43 -0.5
1,084,339 + RR42_RS04885 0.43 -1.6
1,084,340 - RR42_RS04885 0.43 -0.2
1,084,340 - RR42_RS04885 0.43 -0.4
1,084,442 - RR42_RS04885 0.60 +0.4
1,084,704 - +0.8
1,084,895 + RR42_RS04890 0.26 -1.0
1,084,896 - RR42_RS04890 0.27 -0.1

Or see this region's nucleotide sequence