Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04870 and RR42_RS04875 are separated by 294 nucleotides RR42_RS04875 and RR42_RS04880 are separated by 74 nucleotides RR42_RS04880 and RR42_RS04885 overlap by 4 nucleotides RR42_RS04885 and RR42_RS04890 are separated by 13 nucleotides
RR42_RS04870: RR42_RS04870 - tRNA-Ser, at 1,081,862 to 1,081,951
_RS04870
RR42_RS04875: RR42_RS04875 - membrane protein, at 1,082,246 to 1,082,752
_RS04875
RR42_RS04880: RR42_RS04880 - coproporphyrinogen III oxidase, at 1,082,827 to 1,084,077
_RS04880
RR42_RS04885: RR42_RS04885 - nucleoside-triphosphate diphosphatase, at 1,084,074 to 1,084,691
_RS04885
RR42_RS04890: RR42_RS04890 - ribonuclease PH, at 1,084,705 to 1,085,424
_RS04890
Position (kb)
1082
1083
1084
1085 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1081.827 kb on + strand at 1081.827 kb on + strand at 1081.828 kb on - strand at 1081.828 kb on - strand at 1081.961 kb on - strand at 1081.961 kb on - strand at 1082.052 kb on + strand at 1082.052 kb on + strand at 1082.052 kb on + strand at 1082.052 kb on + strand at 1082.053 kb on - strand at 1082.053 kb on - strand at 1082.149 kb on + strand at 1082.149 kb on + strand at 1082.149 kb on + strand at 1082.149 kb on + strand at 1082.150 kb on - strand at 1082.150 kb on - strand at 1082.152 kb on + strand at 1082.152 kb on + strand at 1082.152 kb on + strand at 1082.153 kb on - strand at 1082.153 kb on - strand at 1082.153 kb on - strand at 1082.357 kb on + strand, within RR42_RS04875 at 1082.357 kb on + strand, within RR42_RS04875 at 1082.394 kb on - strand, within RR42_RS04875 at 1082.394 kb on - strand, within RR42_RS04875 at 1082.394 kb on - strand, within RR42_RS04875 at 1082.394 kb on - strand, within RR42_RS04875 at 1082.394 kb on - strand, within RR42_RS04875 at 1082.420 kb on + strand, within RR42_RS04875 at 1082.420 kb on + strand, within RR42_RS04875 at 1082.421 kb on - strand, within RR42_RS04875 at 1082.421 kb on - strand, within RR42_RS04875 at 1082.627 kb on - strand, within RR42_RS04875 at 1082.627 kb on - strand, within RR42_RS04875 at 1082.747 kb on + strand at 1083.105 kb on + strand, within RR42_RS04880 at 1083.105 kb on + strand, within RR42_RS04880 at 1083.107 kb on + strand, within RR42_RS04880 at 1083.108 kb on - strand, within RR42_RS04880 at 1083.108 kb on - strand, within RR42_RS04880 at 1083.194 kb on + strand, within RR42_RS04880 at 1083.195 kb on - strand, within RR42_RS04880 at 1083.212 kb on + strand, within RR42_RS04880 at 1083.267 kb on - strand, within RR42_RS04880 at 1083.275 kb on + strand, within RR42_RS04880 at 1083.320 kb on + strand, within RR42_RS04880 at 1083.320 kb on + strand, within RR42_RS04880 at 1083.320 kb on + strand, within RR42_RS04880 at 1083.320 kb on + strand, within RR42_RS04880 at 1083.392 kb on + strand, within RR42_RS04880 at 1083.393 kb on - strand, within RR42_RS04880 at 1083.393 kb on - strand, within RR42_RS04880 at 1083.477 kb on - strand, within RR42_RS04880 at 1083.809 kb on - strand, within RR42_RS04880 at 1083.854 kb on + strand, within RR42_RS04880 at 1083.920 kb on + strand, within RR42_RS04880 at 1083.949 kb on - strand, within RR42_RS04880 at 1083.957 kb on - strand at 1084.222 kb on + strand, within RR42_RS04885 at 1084.333 kb on + strand, within RR42_RS04885 at 1084.333 kb on + strand, within RR42_RS04885 at 1084.334 kb on - strand, within RR42_RS04885 at 1084.334 kb on - strand, within RR42_RS04885 at 1084.336 kb on + strand, within RR42_RS04885 at 1084.336 kb on + strand, within RR42_RS04885 at 1084.337 kb on - strand, within RR42_RS04885 at 1084.337 kb on - strand, within RR42_RS04885 at 1084.337 kb on - strand, within RR42_RS04885 at 1084.337 kb on - strand, within RR42_RS04885 at 1084.337 kb on - strand, within RR42_RS04885 at 1084.339 kb on + strand, within RR42_RS04885 at 1084.340 kb on - strand, within RR42_RS04885 at 1084.340 kb on - strand, within RR42_RS04885 at 1084.442 kb on - strand, within RR42_RS04885 at 1084.704 kb on - strand at 1084.895 kb on + strand, within RR42_RS04890 at 1084.896 kb on - strand, within RR42_RS04890
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 1,081,827 + -1.1 1,081,827 + +0.4 1,081,828 - +1.0 1,081,828 - -0.3 1,081,961 - -0.5 1,081,961 - -0.8 1,082,052 + -1.0 1,082,052 + -0.5 1,082,052 + +1.3 1,082,052 + +1.0 1,082,053 - -0.2 1,082,053 - +0.3 1,082,149 + -1.0 1,082,149 + -0.4 1,082,149 + -0.2 1,082,149 + +0.3 1,082,150 - +0.1 1,082,150 - -1.0 1,082,152 + +0.0 1,082,152 + +0.6 1,082,152 + +1.0 1,082,153 - -0.8 1,082,153 - +0.4 1,082,153 - +0.1 1,082,357 + RR42_RS04875 0.22 +0.4 1,082,357 + RR42_RS04875 0.22 -2.2 1,082,394 - RR42_RS04875 0.29 -0.2 1,082,394 - RR42_RS04875 0.29 +0.7 1,082,394 - RR42_RS04875 0.29 +1.4 1,082,394 - RR42_RS04875 0.29 +0.2 1,082,394 - RR42_RS04875 0.29 +0.6 1,082,420 + RR42_RS04875 0.34 -0.3 1,082,420 + RR42_RS04875 0.34 -0.1 1,082,421 - RR42_RS04875 0.35 +0.3 1,082,421 - RR42_RS04875 0.35 -0.6 1,082,627 - RR42_RS04875 0.75 -0.7 1,082,627 - RR42_RS04875 0.75 -2.5 1,082,747 + -2.6 1,083,105 + RR42_RS04880 0.22 -1.6 1,083,105 + RR42_RS04880 0.22 -1.2 1,083,107 + RR42_RS04880 0.22 -0.9 1,083,108 - RR42_RS04880 0.22 -0.0 1,083,108 - RR42_RS04880 0.22 -2.4 1,083,194 + RR42_RS04880 0.29 -0.2 1,083,195 - RR42_RS04880 0.29 -0.7 1,083,212 + RR42_RS04880 0.31 -0.9 1,083,267 - RR42_RS04880 0.35 -0.2 1,083,275 + RR42_RS04880 0.36 -0.9 1,083,320 + RR42_RS04880 0.39 +0.1 1,083,320 + RR42_RS04880 0.39 +2.6 1,083,320 + RR42_RS04880 0.39 -0.3 1,083,320 + RR42_RS04880 0.39 -1.4 1,083,392 + RR42_RS04880 0.45 -2.0 1,083,393 - RR42_RS04880 0.45 -0.7 1,083,393 - RR42_RS04880 0.45 -1.6 1,083,477 - RR42_RS04880 0.52 -0.4 1,083,809 - RR42_RS04880 0.78 +0.2 1,083,854 + RR42_RS04880 0.82 -0.4 1,083,920 + RR42_RS04880 0.87 -0.8 1,083,949 - RR42_RS04880 0.90 -1.8 1,083,957 - -1.7 1,084,222 + RR42_RS04885 0.24 -0.3 1,084,333 + RR42_RS04885 0.42 +0.2 1,084,333 + RR42_RS04885 0.42 -0.6 1,084,334 - RR42_RS04885 0.42 -0.9 1,084,334 - RR42_RS04885 0.42 -0.5 1,084,336 + RR42_RS04885 0.42 -1.6 1,084,336 + RR42_RS04885 0.42 +0.0 1,084,337 - RR42_RS04885 0.43 +1.6 1,084,337 - RR42_RS04885 0.43 -0.6 1,084,337 - RR42_RS04885 0.43 -0.4 1,084,337 - RR42_RS04885 0.43 +0.4 1,084,337 - RR42_RS04885 0.43 -0.5 1,084,339 + RR42_RS04885 0.43 -1.6 1,084,340 - RR42_RS04885 0.43 -0.2 1,084,340 - RR42_RS04885 0.43 -0.4 1,084,442 - RR42_RS04885 0.60 +0.4 1,084,704 - +0.8 1,084,895 + RR42_RS04890 0.26 -1.0 1,084,896 - RR42_RS04890 0.27 -0.1
Or see this region's nucleotide sequence