Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04125

Experiment: Ethanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS04120 and RR42_RS04125 are separated by 38 nucleotidesRR42_RS04125 and RR42_RS04130 are separated by 34 nucleotides RR42_RS04120: RR42_RS04120 - pilus assembly protein TadG, at 910,841 to 912,121 _RS04120 RR42_RS04125: RR42_RS04125 - lipoprotein, at 912,160 to 912,501 _RS04125 RR42_RS04130: RR42_RS04130 - secretin, at 912,536 to 914,383 _RS04130 Position (kb) 912 913Strain fitness (log2 ratio) -2 -1 0 1at 911.172 kb on + strand, within RR42_RS04120at 911.219 kb on - strand, within RR42_RS04120at 911.219 kb on - strand, within RR42_RS04120at 911.496 kb on + strand, within RR42_RS04120at 911.550 kb on + strand, within RR42_RS04120at 911.550 kb on + strand, within RR42_RS04120at 911.745 kb on + strand, within RR42_RS04120at 911.746 kb on - strand, within RR42_RS04120at 911.767 kb on - strand, within RR42_RS04120at 911.814 kb on + strand, within RR42_RS04120at 911.814 kb on + strand, within RR42_RS04120at 911.873 kb on - strand, within RR42_RS04120at 911.876 kb on + strand, within RR42_RS04120at 912.260 kb on - strand, within RR42_RS04125at 912.275 kb on + strand, within RR42_RS04125at 912.276 kb on - strand, within RR42_RS04125at 912.276 kb on - strand, within RR42_RS04125at 912.729 kb on - strand, within RR42_RS04130at 912.775 kb on + strand, within RR42_RS04130at 912.900 kb on + strand, within RR42_RS04130at 912.901 kb on - strand, within RR42_RS04130at 912.922 kb on + strand, within RR42_RS04130at 913.082 kb on + strand, within RR42_RS04130at 913.289 kb on + strand, within RR42_RS04130at 913.290 kb on - strand, within RR42_RS04130at 913.290 kb on - strand, within RR42_RS04130at 913.385 kb on - strand, within RR42_RS04130at 913.386 kb on + strand, within RR42_RS04130at 913.387 kb on - strand, within RR42_RS04130at 913.387 kb on - strand, within RR42_RS04130

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
remove
911,172 + RR42_RS04120 0.26 +0.8
911,219 - RR42_RS04120 0.30 -0.6
911,219 - RR42_RS04120 0.30 +0.0
911,496 + RR42_RS04120 0.51 +1.5
911,550 + RR42_RS04120 0.55 +0.2
911,550 + RR42_RS04120 0.55 -0.6
911,745 + RR42_RS04120 0.71 -0.7
911,746 - RR42_RS04120 0.71 +0.0
911,767 - RR42_RS04120 0.72 +0.3
911,814 + RR42_RS04120 0.76 +0.1
911,814 + RR42_RS04120 0.76 +0.2
911,873 - RR42_RS04120 0.81 +0.4
911,876 + RR42_RS04120 0.81 +0.4
912,260 - RR42_RS04125 0.29 +0.1
912,275 + RR42_RS04125 0.34 +1.3
912,276 - RR42_RS04125 0.34 +0.7
912,276 - RR42_RS04125 0.34 +0.4
912,729 - RR42_RS04130 0.10 -0.9
912,775 + RR42_RS04130 0.13 -0.3
912,900 + RR42_RS04130 0.20 +0.3
912,901 - RR42_RS04130 0.20 -2.2
912,922 + RR42_RS04130 0.21 +0.1
913,082 + RR42_RS04130 0.30 -0.1
913,289 + RR42_RS04130 0.41 -1.3
913,290 - RR42_RS04130 0.41 +0.8
913,290 - RR42_RS04130 0.41 -1.1
913,385 - RR42_RS04130 0.46 +0.0
913,386 + RR42_RS04130 0.46 -0.2
913,387 - RR42_RS04130 0.46 +0.2
913,387 - RR42_RS04130 0.46 +0.7

Or see this region's nucleotide sequence