Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03215

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03210 and RR42_RS03215 are separated by 162 nucleotidesRR42_RS03215 and RR42_RS03220 are separated by 186 nucleotides RR42_RS03210: RR42_RS03210 - pyruvate kinase, at 710,647 to 712,083 _RS03210 RR42_RS03215: RR42_RS03215 - fructose-bisphosphate aldolase, at 712,246 to 713,310 _RS03215 RR42_RS03220: RR42_RS03220 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 713,497 to 714,405 _RS03220 Position (kb) 712 713 714Strain fitness (log2 ratio) -2 -1 0 1at 711.760 kb on + strand, within RR42_RS03210at 711.773 kb on + strand, within RR42_RS03210at 711.850 kb on + strand, within RR42_RS03210at 711.850 kb on + strand, within RR42_RS03210at 711.850 kb on + strand, within RR42_RS03210at 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 712.005 kb on + strandat 712.053 kb on + strandat 712.084 kb on + strandat 712.084 kb on + strandat 712.138 kb on + strandat 713.308 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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711,760 + RR42_RS03210 0.77 -2.5
711,773 + RR42_RS03210 0.78 +0.7
711,850 + RR42_RS03210 0.84 +0.5
711,850 + RR42_RS03210 0.84 +0.3
711,850 + RR42_RS03210 0.84 +0.5
711,968 + -0.3
711,968 + -0.7
711,968 + +0.1
711,968 + -0.3
711,968 + +0.2
711,968 + -0.3
711,968 + -0.1
711,968 + -0.5
712,005 + -0.3
712,053 + -0.7
712,084 + +0.1
712,084 + +0.1
712,138 + +1.2
713,308 + +0.0

Or see this region's nucleotide sequence