Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03090 and RR42_RS03095 are separated by 69 nucleotides RR42_RS03095 and RR42_RS03100 are separated by 81 nucleotides
RR42_RS03090: RR42_RS03090 - hypothetical protein, at 683,430 to 684,104
_RS03090
RR42_RS03095: RR42_RS03095 - succinyl-CoA synthetase subunit beta, at 684,174 to 685,340
_RS03095
RR42_RS03100: RR42_RS03100 - succinate--CoA ligase, at 685,422 to 686,303
_RS03100
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1
2 at 683.194 kb on + strand at 683.215 kb on + strand at 683.215 kb on + strand at 683.374 kb on - strand at 683.429 kb on + strand at 683.429 kb on + strand at 683.430 kb on - strand at 683.493 kb on + strand at 683.493 kb on + strand at 683.494 kb on - strand at 683.498 kb on + strand, within RR42_RS03090 at 683.498 kb on + strand, within RR42_RS03090 at 683.499 kb on - strand, within RR42_RS03090 at 683.512 kb on + strand, within RR42_RS03090 at 683.578 kb on + strand, within RR42_RS03090 at 683.818 kb on + strand, within RR42_RS03090 at 683.894 kb on + strand, within RR42_RS03090 at 683.894 kb on + strand, within RR42_RS03090 at 683.907 kb on + strand, within RR42_RS03090 at 683.907 kb on + strand, within RR42_RS03090 at 683.907 kb on + strand, within RR42_RS03090 at 683.953 kb on + strand, within RR42_RS03090 at 683.953 kb on + strand, within RR42_RS03090 at 683.976 kb on + strand, within RR42_RS03090 at 684.149 kb on + strand at 684.189 kb on + strand at 684.190 kb on - strand at 684.217 kb on - strand at 684.498 kb on + strand, within RR42_RS03095 at 684.726 kb on + strand, within RR42_RS03095 at 684.727 kb on - strand, within RR42_RS03095 at 684.927 kb on + strand, within RR42_RS03095 at 685.338 kb on + strand at 685.338 kb on + strand at 685.338 kb on + strand at 685.417 kb on - strand at 685.439 kb on + strand at 685.512 kb on + strand, within RR42_RS03100 at 685.645 kb on - strand, within RR42_RS03100 at 686.301 kb on + strand at 686.301 kb on + strand at 686.302 kb on - strand at 686.305 kb on + strand at 686.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 683,194 + -0.2 683,215 + +0.2 683,215 + +1.8 683,374 - -2.3 683,429 + -0.0 683,429 + -0.2 683,430 - -2.1 683,493 + -0.6 683,493 + -1.1 683,494 - -2.7 683,498 + RR42_RS03090 0.10 +1.1 683,498 + RR42_RS03090 0.10 +0.3 683,499 - RR42_RS03090 0.10 -0.3 683,512 + RR42_RS03090 0.12 -0.2 683,578 + RR42_RS03090 0.22 -0.1 683,818 + RR42_RS03090 0.57 +0.2 683,894 + RR42_RS03090 0.69 -1.7 683,894 + RR42_RS03090 0.69 +0.2 683,907 + RR42_RS03090 0.71 -0.2 683,907 + RR42_RS03090 0.71 +0.1 683,907 + RR42_RS03090 0.71 -1.0 683,953 + RR42_RS03090 0.77 -0.4 683,953 + RR42_RS03090 0.77 +0.3 683,976 + RR42_RS03090 0.81 -0.2 684,149 + -0.6 684,189 + -0.9 684,190 - -1.3 684,217 - -1.4 684,498 + RR42_RS03095 0.28 -0.5 684,726 + RR42_RS03095 0.47 +0.1 684,727 - RR42_RS03095 0.47 -2.3 684,927 + RR42_RS03095 0.65 -2.3 685,338 + +0.4 685,338 + +1.4 685,338 + -0.1 685,417 - -1.9 685,439 + -0.5 685,512 + RR42_RS03100 0.10 -1.5 685,645 - RR42_RS03100 0.25 -0.3 686,301 + -0.9 686,301 + -0.0 686,302 - -0.6 686,305 + +0.7 686,306 - +1.6
Or see this region's nucleotide sequence