Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03070 and RR42_RS03075 are separated by 99 nucleotides RR42_RS03075 and RR42_RS03080 are separated by 310 nucleotides
RR42_RS03070: RR42_RS03070 - histidine kinase, at 678,729 to 680,285
_RS03070
RR42_RS03075: RR42_RS03075 - transcriptional regulator, at 680,385 to 681,071
_RS03075
RR42_RS03080: RR42_RS03080 - recombinase RecA, at 681,382 to 682,455
_RS03080
Position (kb) 680
681
682 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 679.418 kb on + strand, within RR42_RS03070 at 679.753 kb on + strand, within RR42_RS03070 at 679.753 kb on + strand, within RR42_RS03070 at 679.753 kb on + strand, within RR42_RS03070 at 679.754 kb on - strand, within RR42_RS03070 at 679.754 kb on - strand, within RR42_RS03070 at 679.759 kb on + strand, within RR42_RS03070 at 679.760 kb on - strand, within RR42_RS03070 at 679.760 kb on - strand, within RR42_RS03070 at 679.760 kb on - strand, within RR42_RS03070 at 679.897 kb on + strand, within RR42_RS03070 at 679.898 kb on - strand, within RR42_RS03070 at 679.900 kb on + strand, within RR42_RS03070 at 679.900 kb on + strand, within RR42_RS03070 at 679.901 kb on - strand, within RR42_RS03070 at 679.901 kb on - strand, within RR42_RS03070 at 679.901 kb on - strand, within RR42_RS03070 at 680.045 kb on + strand, within RR42_RS03070 at 680.045 kb on + strand, within RR42_RS03070 at 680.046 kb on - strand, within RR42_RS03070 at 680.062 kb on + strand, within RR42_RS03070 at 680.062 kb on + strand, within RR42_RS03070 at 680.063 kb on - strand, within RR42_RS03070 at 680.063 kb on - strand, within RR42_RS03070 at 680.063 kb on - strand, within RR42_RS03070 at 680.374 kb on - strand at 680.374 kb on - strand at 680.474 kb on - strand, within RR42_RS03075 at 680.490 kb on + strand, within RR42_RS03075 at 680.490 kb on + strand, within RR42_RS03075 at 680.490 kb on + strand, within RR42_RS03075 at 680.490 kb on + strand, within RR42_RS03075 at 680.491 kb on - strand, within RR42_RS03075 at 680.491 kb on - strand, within RR42_RS03075 at 680.491 kb on - strand, within RR42_RS03075 at 680.494 kb on + strand, within RR42_RS03075 at 680.494 kb on + strand, within RR42_RS03075 at 680.495 kb on - strand, within RR42_RS03075 at 680.495 kb on - strand, within RR42_RS03075 at 680.647 kb on + strand, within RR42_RS03075 at 680.648 kb on - strand, within RR42_RS03075 at 680.779 kb on + strand, within RR42_RS03075 at 680.779 kb on + strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 681.012 kb on + strand at 681.012 kb on + strand at 681.012 kb on + strand at 681.013 kb on - strand at 681.065 kb on + strand at 681.066 kb on - strand at 681.066 kb on - strand at 681.066 kb on - strand at 681.095 kb on + strand at 681.107 kb on + strand at 681.108 kb on - strand at 681.141 kb on + strand at 681.153 kb on - strand at 681.154 kb on + strand at 681.199 kb on + strand at 681.234 kb on - strand at 681.234 kb on - strand at 681.353 kb on - strand at 681.356 kb on + strand at 681.356 kb on + strand at 681.357 kb on - strand at 681.358 kb on + strand at 681.719 kb on - strand, within RR42_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 679,418 + RR42_RS03070 0.44 -1.8 679,753 + RR42_RS03070 0.66 -2.1 679,753 + RR42_RS03070 0.66 -1.4 679,753 + RR42_RS03070 0.66 -1.3 679,754 - RR42_RS03070 0.66 -2.3 679,754 - RR42_RS03070 0.66 -1.5 679,759 + RR42_RS03070 0.66 +0.4 679,760 - RR42_RS03070 0.66 -3.1 679,760 - RR42_RS03070 0.66 -4.8 679,760 - RR42_RS03070 0.66 -0.9 679,897 + RR42_RS03070 0.75 -1.9 679,898 - RR42_RS03070 0.75 -1.7 679,900 + RR42_RS03070 0.75 -2.1 679,900 + RR42_RS03070 0.75 -0.7 679,901 - RR42_RS03070 0.75 -1.0 679,901 - RR42_RS03070 0.75 -0.8 679,901 - RR42_RS03070 0.75 -3.5 680,045 + RR42_RS03070 0.85 -3.0 680,045 + RR42_RS03070 0.85 -2.0 680,046 - RR42_RS03070 0.85 -1.6 680,062 + RR42_RS03070 0.86 -1.5 680,062 + RR42_RS03070 0.86 -1.9 680,063 - RR42_RS03070 0.86 +0.1 680,063 - RR42_RS03070 0.86 -2.4 680,063 - RR42_RS03070 0.86 -1.9 680,374 - -0.1 680,374 - -0.5 680,474 - RR42_RS03075 0.13 -1.5 680,490 + RR42_RS03075 0.15 -3.8 680,490 + RR42_RS03075 0.15 -2.9 680,490 + RR42_RS03075 0.15 -0.5 680,490 + RR42_RS03075 0.15 -2.5 680,491 - RR42_RS03075 0.15 -3.0 680,491 - RR42_RS03075 0.15 -1.9 680,491 - RR42_RS03075 0.15 -3.6 680,494 + RR42_RS03075 0.16 -1.5 680,494 + RR42_RS03075 0.16 -3.0 680,495 - RR42_RS03075 0.16 -2.4 680,495 - RR42_RS03075 0.16 -1.4 680,647 + RR42_RS03075 0.38 -2.3 680,648 - RR42_RS03075 0.38 -2.8 680,779 + RR42_RS03075 0.57 -0.9 680,779 + RR42_RS03075 0.57 -2.7 680,780 - RR42_RS03075 0.57 -1.8 680,780 - RR42_RS03075 0.57 -2.7 680,780 - RR42_RS03075 0.57 -2.6 680,780 - RR42_RS03075 0.57 -0.9 680,780 - RR42_RS03075 0.57 -1.5 680,780 - RR42_RS03075 0.57 -3.0 681,012 + -1.3 681,012 + -2.6 681,012 + -0.7 681,013 - -0.8 681,065 + -2.0 681,066 - -1.7 681,066 - -3.4 681,066 - -2.4 681,095 + -1.3 681,107 + -2.3 681,108 - +0.1 681,141 + +2.4 681,153 - -1.8 681,154 + -1.5 681,199 + -2.4 681,234 - -0.9 681,234 - -1.0 681,353 - -1.9 681,356 + -1.7 681,356 + -2.6 681,357 - +0.6 681,358 + -0.9 681,719 - RR42_RS03080 0.31 +2.1
Or see this region's nucleotide sequence