Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03070

Experiment: Ethanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS03060 and RR42_RS03065 are separated by 264 nucleotidesRR42_RS03065 and RR42_RS03070 overlap by 4 nucleotidesRR42_RS03070 and RR42_RS03075 are separated by 99 nucleotides RR42_RS03060: RR42_RS03060 - MFS transporter, at 676,450 to 678,150 _RS03060 RR42_RS03065: RR42_RS03065 - membrane protein, at 678,415 to 678,732 _RS03065 RR42_RS03070: RR42_RS03070 - histidine kinase, at 678,729 to 680,285 _RS03070 RR42_RS03075: RR42_RS03075 - transcriptional regulator, at 680,385 to 681,071 _RS03075 Position (kb) 678 679 680 681Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 677.861 kb on + strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 678.264 kb on - strandat 678.298 kb on + strandat 678.313 kb on + strandat 678.313 kb on + strandat 678.313 kb on + strandat 678.314 kb on - strandat 678.314 kb on - strandat 678.314 kb on - strandat 678.416 kb on + strandat 678.416 kb on + strandat 678.417 kb on - strandat 678.497 kb on + strand, within RR42_RS03065at 678.497 kb on + strand, within RR42_RS03065at 678.497 kb on + strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.519 kb on - strand, within RR42_RS03065at 678.635 kb on - strand, within RR42_RS03065at 678.806 kb on - strandat 678.806 kb on - strandat 678.911 kb on - strand, within RR42_RS03070at 678.979 kb on + strand, within RR42_RS03070at 679.043 kb on - strand, within RR42_RS03070at 679.418 kb on + strand, within RR42_RS03070at 679.753 kb on + strand, within RR42_RS03070at 679.753 kb on + strand, within RR42_RS03070at 679.753 kb on + strand, within RR42_RS03070at 679.754 kb on - strand, within RR42_RS03070at 679.754 kb on - strand, within RR42_RS03070at 679.759 kb on + strand, within RR42_RS03070at 679.760 kb on - strand, within RR42_RS03070at 679.760 kb on - strand, within RR42_RS03070at 679.760 kb on - strand, within RR42_RS03070at 679.897 kb on + strand, within RR42_RS03070at 679.898 kb on - strand, within RR42_RS03070at 679.900 kb on + strand, within RR42_RS03070at 679.900 kb on + strand, within RR42_RS03070at 679.901 kb on - strand, within RR42_RS03070at 679.901 kb on - strand, within RR42_RS03070at 679.901 kb on - strand, within RR42_RS03070at 680.045 kb on + strand, within RR42_RS03070at 680.045 kb on + strand, within RR42_RS03070at 680.046 kb on - strand, within RR42_RS03070at 680.062 kb on + strand, within RR42_RS03070at 680.062 kb on + strand, within RR42_RS03070at 680.063 kb on - strand, within RR42_RS03070at 680.063 kb on - strand, within RR42_RS03070at 680.063 kb on - strand, within RR42_RS03070at 680.374 kb on - strandat 680.374 kb on - strandat 680.474 kb on - strand, within RR42_RS03075at 680.490 kb on + strand, within RR42_RS03075at 680.490 kb on + strand, within RR42_RS03075at 680.490 kb on + strand, within RR42_RS03075at 680.490 kb on + strand, within RR42_RS03075at 680.491 kb on - strand, within RR42_RS03075at 680.491 kb on - strand, within RR42_RS03075at 680.491 kb on - strand, within RR42_RS03075at 680.494 kb on + strand, within RR42_RS03075at 680.494 kb on + strand, within RR42_RS03075at 680.495 kb on - strand, within RR42_RS03075at 680.495 kb on - strand, within RR42_RS03075at 680.647 kb on + strand, within RR42_RS03075at 680.648 kb on - strand, within RR42_RS03075at 680.779 kb on + strand, within RR42_RS03075at 680.779 kb on + strand, within RR42_RS03075at 680.780 kb on - strand, within RR42_RS03075at 680.780 kb on - strand, within RR42_RS03075at 680.780 kb on - strand, within RR42_RS03075at 680.780 kb on - strand, within RR42_RS03075at 680.780 kb on - strand, within RR42_RS03075at 680.780 kb on - strand, within RR42_RS03075at 681.012 kb on + strandat 681.012 kb on + strandat 681.012 kb on + strandat 681.013 kb on - strandat 681.065 kb on + strandat 681.066 kb on - strandat 681.066 kb on - strandat 681.066 kb on - strandat 681.095 kb on + strandat 681.107 kb on + strandat 681.108 kb on - strandat 681.141 kb on + strandat 681.153 kb on - strandat 681.154 kb on + strandat 681.199 kb on + strandat 681.234 kb on - strandat 681.234 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
remove
677,861 + RR42_RS03060 0.83 +0.1
677,862 - RR42_RS03060 0.83 -1.5
677,862 - RR42_RS03060 0.83 -0.1
677,862 - RR42_RS03060 0.83 +0.1
677,862 - RR42_RS03060 0.83 +1.3
678,264 - -0.2
678,298 + +0.5
678,313 + +0.1
678,313 + -0.3
678,313 + -0.7
678,314 - -0.6
678,314 - -0.2
678,314 - -0.9
678,416 + -0.4
678,416 + -0.2
678,417 - -0.4
678,497 + RR42_RS03065 0.26 -2.7
678,497 + RR42_RS03065 0.26 -2.2
678,497 + RR42_RS03065 0.26 +0.1
678,498 - RR42_RS03065 0.26 -1.9
678,498 - RR42_RS03065 0.26 +0.1
678,498 - RR42_RS03065 0.26 -1.1
678,498 - RR42_RS03065 0.26 -1.3
678,498 - RR42_RS03065 0.26 -1.6
678,498 - RR42_RS03065 0.26 -1.5
678,519 - RR42_RS03065 0.33 -1.4
678,635 - RR42_RS03065 0.69 -1.6
678,806 - -0.6
678,806 - +0.6
678,911 - RR42_RS03070 0.12 -3.3
678,979 + RR42_RS03070 0.16 -2.6
679,043 - RR42_RS03070 0.20 -2.4
679,418 + RR42_RS03070 0.44 -1.8
679,753 + RR42_RS03070 0.66 -2.1
679,753 + RR42_RS03070 0.66 -1.4
679,753 + RR42_RS03070 0.66 -1.3
679,754 - RR42_RS03070 0.66 -2.3
679,754 - RR42_RS03070 0.66 -1.5
679,759 + RR42_RS03070 0.66 +0.4
679,760 - RR42_RS03070 0.66 -3.1
679,760 - RR42_RS03070 0.66 -4.8
679,760 - RR42_RS03070 0.66 -0.9
679,897 + RR42_RS03070 0.75 -1.9
679,898 - RR42_RS03070 0.75 -1.7
679,900 + RR42_RS03070 0.75 -2.1
679,900 + RR42_RS03070 0.75 -0.7
679,901 - RR42_RS03070 0.75 -1.0
679,901 - RR42_RS03070 0.75 -0.8
679,901 - RR42_RS03070 0.75 -3.5
680,045 + RR42_RS03070 0.85 -3.0
680,045 + RR42_RS03070 0.85 -2.0
680,046 - RR42_RS03070 0.85 -1.6
680,062 + RR42_RS03070 0.86 -1.5
680,062 + RR42_RS03070 0.86 -1.9
680,063 - RR42_RS03070 0.86 +0.1
680,063 - RR42_RS03070 0.86 -2.4
680,063 - RR42_RS03070 0.86 -1.9
680,374 - -0.1
680,374 - -0.5
680,474 - RR42_RS03075 0.13 -1.5
680,490 + RR42_RS03075 0.15 -3.8
680,490 + RR42_RS03075 0.15 -2.9
680,490 + RR42_RS03075 0.15 -0.5
680,490 + RR42_RS03075 0.15 -2.5
680,491 - RR42_RS03075 0.15 -3.0
680,491 - RR42_RS03075 0.15 -1.9
680,491 - RR42_RS03075 0.15 -3.6
680,494 + RR42_RS03075 0.16 -1.5
680,494 + RR42_RS03075 0.16 -3.0
680,495 - RR42_RS03075 0.16 -2.4
680,495 - RR42_RS03075 0.16 -1.4
680,647 + RR42_RS03075 0.38 -2.3
680,648 - RR42_RS03075 0.38 -2.8
680,779 + RR42_RS03075 0.57 -0.9
680,779 + RR42_RS03075 0.57 -2.7
680,780 - RR42_RS03075 0.57 -1.8
680,780 - RR42_RS03075 0.57 -2.7
680,780 - RR42_RS03075 0.57 -2.6
680,780 - RR42_RS03075 0.57 -0.9
680,780 - RR42_RS03075 0.57 -1.5
680,780 - RR42_RS03075 0.57 -3.0
681,012 + -1.3
681,012 + -2.6
681,012 + -0.7
681,013 - -0.8
681,065 + -2.0
681,066 - -1.7
681,066 - -3.4
681,066 - -2.4
681,095 + -1.3
681,107 + -2.3
681,108 - +0.1
681,141 + +2.4
681,153 - -1.8
681,154 + -1.5
681,199 + -2.4
681,234 - -0.9
681,234 - -1.0

Or see this region's nucleotide sequence