Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03060 and RR42_RS03065 are separated by 264 nucleotides RR42_RS03065 and RR42_RS03070 overlap by 4 nucleotides
RR42_RS03060: RR42_RS03060 - MFS transporter, at 676,450 to 678,150
_RS03060
RR42_RS03065: RR42_RS03065 - membrane protein, at 678,415 to 678,732
_RS03065
RR42_RS03070: RR42_RS03070 - histidine kinase, at 678,729 to 680,285
_RS03070
Position (kb) 678
679 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 677.507 kb on + strand, within RR42_RS03060 at 677.508 kb on - strand, within RR42_RS03060 at 677.508 kb on - strand, within RR42_RS03060 at 677.508 kb on - strand, within RR42_RS03060 at 677.660 kb on + strand, within RR42_RS03060 at 677.660 kb on + strand, within RR42_RS03060 at 677.660 kb on + strand, within RR42_RS03060 at 677.660 kb on + strand, within RR42_RS03060 at 677.661 kb on - strand, within RR42_RS03060 at 677.661 kb on - strand, within RR42_RS03060 at 677.661 kb on - strand, within RR42_RS03060 at 677.699 kb on + strand, within RR42_RS03060 at 677.699 kb on + strand, within RR42_RS03060 at 677.700 kb on - strand, within RR42_RS03060 at 677.700 kb on - strand, within RR42_RS03060 at 677.700 kb on - strand, within RR42_RS03060 at 677.861 kb on + strand, within RR42_RS03060 at 677.862 kb on - strand, within RR42_RS03060 at 677.862 kb on - strand, within RR42_RS03060 at 677.862 kb on - strand, within RR42_RS03060 at 677.862 kb on - strand, within RR42_RS03060 at 678.264 kb on - strand at 678.298 kb on + strand at 678.313 kb on + strand at 678.313 kb on + strand at 678.313 kb on + strand at 678.314 kb on - strand at 678.314 kb on - strand at 678.314 kb on - strand at 678.416 kb on + strand at 678.416 kb on + strand at 678.417 kb on - strand at 678.497 kb on + strand, within RR42_RS03065 at 678.497 kb on + strand, within RR42_RS03065 at 678.497 kb on + strand, within RR42_RS03065 at 678.498 kb on - strand, within RR42_RS03065 at 678.498 kb on - strand, within RR42_RS03065 at 678.498 kb on - strand, within RR42_RS03065 at 678.498 kb on - strand, within RR42_RS03065 at 678.498 kb on - strand, within RR42_RS03065 at 678.498 kb on - strand, within RR42_RS03065 at 678.519 kb on - strand, within RR42_RS03065 at 678.635 kb on - strand, within RR42_RS03065 at 678.806 kb on - strand at 678.806 kb on - strand at 678.911 kb on - strand, within RR42_RS03070 at 678.979 kb on + strand, within RR42_RS03070 at 679.043 kb on - strand, within RR42_RS03070 at 679.418 kb on + strand, within RR42_RS03070
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 677,507 + RR42_RS03060 0.62 +0.5 677,508 - RR42_RS03060 0.62 +0.0 677,508 - RR42_RS03060 0.62 +0.4 677,508 - RR42_RS03060 0.62 +0.9 677,660 + RR42_RS03060 0.71 -0.9 677,660 + RR42_RS03060 0.71 +0.2 677,660 + RR42_RS03060 0.71 +0.7 677,660 + RR42_RS03060 0.71 +2.3 677,661 - RR42_RS03060 0.71 -0.7 677,661 - RR42_RS03060 0.71 -0.5 677,661 - RR42_RS03060 0.71 -0.2 677,699 + RR42_RS03060 0.73 -0.5 677,699 + RR42_RS03060 0.73 +3.1 677,700 - RR42_RS03060 0.73 -0.3 677,700 - RR42_RS03060 0.73 +0.3 677,700 - RR42_RS03060 0.73 -0.1 677,861 + RR42_RS03060 0.83 +0.1 677,862 - RR42_RS03060 0.83 -1.5 677,862 - RR42_RS03060 0.83 -0.1 677,862 - RR42_RS03060 0.83 +0.1 677,862 - RR42_RS03060 0.83 +1.3 678,264 - -0.2 678,298 + +0.5 678,313 + +0.1 678,313 + -0.3 678,313 + -0.7 678,314 - -0.6 678,314 - -0.2 678,314 - -0.9 678,416 + -0.4 678,416 + -0.2 678,417 - -0.4 678,497 + RR42_RS03065 0.26 -2.7 678,497 + RR42_RS03065 0.26 -2.2 678,497 + RR42_RS03065 0.26 +0.1 678,498 - RR42_RS03065 0.26 -1.9 678,498 - RR42_RS03065 0.26 +0.1 678,498 - RR42_RS03065 0.26 -1.1 678,498 - RR42_RS03065 0.26 -1.3 678,498 - RR42_RS03065 0.26 -1.6 678,498 - RR42_RS03065 0.26 -1.5 678,519 - RR42_RS03065 0.33 -1.4 678,635 - RR42_RS03065 0.69 -1.6 678,806 - -0.6 678,806 - +0.6 678,911 - RR42_RS03070 0.12 -3.3 678,979 + RR42_RS03070 0.16 -2.6 679,043 - RR42_RS03070 0.20 -2.4 679,418 + RR42_RS03070 0.44 -1.8
Or see this region's nucleotide sequence