Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01275

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01270 and RR42_RS01275 are separated by 48 nucleotidesRR42_RS01275 and RR42_RS01280 are separated by 293 nucleotides RR42_RS01270: RR42_RS01270 - 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase, at 287,323 to 288,198 _RS01270 RR42_RS01275: RR42_RS01275 - aldehyde dehydrogenase, at 288,247 to 289,659 _RS01275 RR42_RS01280: RR42_RS01280 - GMC family oxidoreductase, at 289,953 to 291,632 _RS01280 Position (kb) 288 289 290Strain fitness (log2 ratio) -2 -1 0 1 2 3at 287.259 kb on + strandat 287.341 kb on + strandat 287.341 kb on + strandat 287.343 kb on + strandat 287.343 kb on + strandat 287.344 kb on - strandat 287.344 kb on - strandat 287.572 kb on + strand, within RR42_RS01270at 287.572 kb on + strand, within RR42_RS01270at 287.572 kb on + strand, within RR42_RS01270at 287.573 kb on - strand, within RR42_RS01270at 287.573 kb on - strand, within RR42_RS01270at 287.573 kb on - strand, within RR42_RS01270at 287.600 kb on - strand, within RR42_RS01270at 287.600 kb on - strand, within RR42_RS01270at 287.647 kb on - strand, within RR42_RS01270at 287.647 kb on - strand, within RR42_RS01270at 287.647 kb on - strand, within RR42_RS01270at 287.913 kb on + strand, within RR42_RS01270at 287.913 kb on + strand, within RR42_RS01270at 287.913 kb on + strand, within RR42_RS01270at 287.914 kb on - strand, within RR42_RS01270at 287.914 kb on - strand, within RR42_RS01270at 287.938 kb on + strand, within RR42_RS01270at 287.938 kb on + strand, within RR42_RS01270at 287.939 kb on - strand, within RR42_RS01270at 287.989 kb on + strand, within RR42_RS01270at 287.990 kb on - strand, within RR42_RS01270at 287.990 kb on - strand, within RR42_RS01270at 288.047 kb on + strand, within RR42_RS01270at 288.047 kb on + strand, within RR42_RS01270at 288.048 kb on - strand, within RR42_RS01270at 288.048 kb on - strand, within RR42_RS01270at 288.106 kb on + strand, within RR42_RS01270at 288.106 kb on + strand, within RR42_RS01270at 288.107 kb on - strand, within RR42_RS01270at 288.107 kb on - strand, within RR42_RS01270at 288.107 kb on - strand, within RR42_RS01270at 288.107 kb on - strand, within RR42_RS01270at 288.109 kb on + strand, within RR42_RS01270at 288.109 kb on + strand, within RR42_RS01270at 288.109 kb on + strand, within RR42_RS01270at 288.109 kb on + strand, within RR42_RS01270at 288.110 kb on - strand, within RR42_RS01270at 288.110 kb on - strand, within RR42_RS01270at 288.110 kb on - strand, within RR42_RS01270at 288.110 kb on - strand, within RR42_RS01270at 288.138 kb on + strandat 288.138 kb on + strandat 288.138 kb on + strandat 288.138 kb on + strandat 288.138 kb on + strandat 288.139 kb on - strandat 288.139 kb on - strandat 288.139 kb on - strandat 288.139 kb on - strandat 288.139 kb on - strandat 288.139 kb on - strandat 288.383 kb on + strandat 288.383 kb on + strandat 288.384 kb on - strandat 288.384 kb on - strandat 288.384 kb on - strandat 288.384 kb on - strandat 288.527 kb on + strand, within RR42_RS01275at 288.528 kb on - strand, within RR42_RS01275at 288.528 kb on - strand, within RR42_RS01275at 288.528 kb on - strand, within RR42_RS01275at 288.560 kb on + strand, within RR42_RS01275at 288.560 kb on + strand, within RR42_RS01275at 288.560 kb on + strand, within RR42_RS01275at 288.561 kb on - strand, within RR42_RS01275at 288.561 kb on - strand, within RR42_RS01275at 288.587 kb on + strand, within RR42_RS01275at 288.902 kb on + strand, within RR42_RS01275at 288.902 kb on + strand, within RR42_RS01275at 288.902 kb on + strand, within RR42_RS01275at 288.903 kb on - strand, within RR42_RS01275at 288.903 kb on - strand, within RR42_RS01275at 289.224 kb on - strand, within RR42_RS01275at 289.292 kb on + strand, within RR42_RS01275at 289.292 kb on + strand, within RR42_RS01275at 289.293 kb on - strand, within RR42_RS01275at 289.293 kb on - strand, within RR42_RS01275at 289.293 kb on - strand, within RR42_RS01275at 289.301 kb on + strand, within RR42_RS01275at 289.302 kb on - strand, within RR42_RS01275at 289.302 kb on - strand, within RR42_RS01275at 289.723 kb on + strandat 289.723 kb on + strandat 289.723 kb on + strandat 289.723 kb on + strandat 289.724 kb on - strandat 289.785 kb on + strandat 289.787 kb on + strandat 289.788 kb on - strandat 289.788 kb on - strandat 289.831 kb on + strandat 289.831 kb on + strandat 289.832 kb on - strandat 289.832 kb on - strandat 289.832 kb on - strandat 289.832 kb on - strandat 289.832 kb on - strandat 289.971 kb on + strandat 289.972 kb on - strandat 290.136 kb on - strand, within RR42_RS01280at 290.136 kb on - strand, within RR42_RS01280at 290.139 kb on + strand, within RR42_RS01280at 290.139 kb on + strand, within RR42_RS01280at 290.139 kb on + strand, within RR42_RS01280at 290.140 kb on - strand, within RR42_RS01280at 290.140 kb on - strand, within RR42_RS01280at 290.140 kb on - strand, within RR42_RS01280at 290.241 kb on + strand, within RR42_RS01280at 290.241 kb on + strand, within RR42_RS01280at 290.241 kb on + strand, within RR42_RS01280at 290.265 kb on + strand, within RR42_RS01280at 290.323 kb on - strand, within RR42_RS01280

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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287,259 + -0.3
287,341 + +0.9
287,341 + +0.7
287,343 + +1.8
287,343 + -0.2
287,344 - +0.2
287,344 - -0.2
287,572 + RR42_RS01270 0.28 -0.3
287,572 + RR42_RS01270 0.28 -0.1
287,572 + RR42_RS01270 0.28 -0.9
287,573 - RR42_RS01270 0.29 -0.5
287,573 - RR42_RS01270 0.29 +1.8
287,573 - RR42_RS01270 0.29 +1.0
287,600 - RR42_RS01270 0.32 -0.2
287,600 - RR42_RS01270 0.32 -0.4
287,647 - RR42_RS01270 0.37 +0.3
287,647 - RR42_RS01270 0.37 -0.2
287,647 - RR42_RS01270 0.37 -0.8
287,913 + RR42_RS01270 0.67 -0.6
287,913 + RR42_RS01270 0.67 +1.0
287,913 + RR42_RS01270 0.67 +0.1
287,914 - RR42_RS01270 0.67 -1.5
287,914 - RR42_RS01270 0.67 +0.5
287,938 + RR42_RS01270 0.70 -0.9
287,938 + RR42_RS01270 0.70 +0.3
287,939 - RR42_RS01270 0.70 -0.0
287,989 + RR42_RS01270 0.76 +0.6
287,990 - RR42_RS01270 0.76 -0.6
287,990 - RR42_RS01270 0.76 +1.7
288,047 + RR42_RS01270 0.83 +0.1
288,047 + RR42_RS01270 0.83 +0.4
288,048 - RR42_RS01270 0.83 +0.2
288,048 - RR42_RS01270 0.83 -0.2
288,106 + RR42_RS01270 0.89 +1.1
288,106 + RR42_RS01270 0.89 +0.5
288,107 - RR42_RS01270 0.89 -0.6
288,107 - RR42_RS01270 0.89 -0.6
288,107 - RR42_RS01270 0.89 +0.5
288,107 - RR42_RS01270 0.89 -0.4
288,109 + RR42_RS01270 0.90 +0.7
288,109 + RR42_RS01270 0.90 +0.6
288,109 + RR42_RS01270 0.90 -0.1
288,109 + RR42_RS01270 0.90 -0.5
288,110 - RR42_RS01270 0.90 +0.1
288,110 - RR42_RS01270 0.90 +0.9
288,110 - RR42_RS01270 0.90 -0.1
288,110 - RR42_RS01270 0.90 -0.0
288,138 + -0.6
288,138 + -0.4
288,138 + +0.4
288,138 + +0.1
288,138 + -0.0
288,139 - +0.5
288,139 - +0.3
288,139 - -0.3
288,139 - +0.9
288,139 - -0.1
288,139 - -0.6
288,383 + +0.3
288,383 + +0.2
288,384 - +0.1
288,384 - +0.9
288,384 - +0.9
288,384 - +0.1
288,527 + RR42_RS01275 0.20 -0.9
288,528 - RR42_RS01275 0.20 -0.9
288,528 - RR42_RS01275 0.20 -0.2
288,528 - RR42_RS01275 0.20 -1.4
288,560 + RR42_RS01275 0.22 +0.6
288,560 + RR42_RS01275 0.22 -0.2
288,560 + RR42_RS01275 0.22 +0.0
288,561 - RR42_RS01275 0.22 +1.0
288,561 - RR42_RS01275 0.22 -1.0
288,587 + RR42_RS01275 0.24 -0.4
288,902 + RR42_RS01275 0.46 +0.4
288,902 + RR42_RS01275 0.46 +0.8
288,902 + RR42_RS01275 0.46 +0.2
288,903 - RR42_RS01275 0.46 +0.6
288,903 - RR42_RS01275 0.46 -1.3
289,224 - RR42_RS01275 0.69 -0.0
289,292 + RR42_RS01275 0.74 +0.1
289,292 + RR42_RS01275 0.74 -1.1
289,293 - RR42_RS01275 0.74 -0.1
289,293 - RR42_RS01275 0.74 +1.1
289,293 - RR42_RS01275 0.74 +3.6
289,301 + RR42_RS01275 0.75 +0.2
289,302 - RR42_RS01275 0.75 -1.9
289,302 - RR42_RS01275 0.75 +0.9
289,723 + +1.1
289,723 + -0.4
289,723 + +0.5
289,723 + +0.3
289,724 - -0.9
289,785 + -0.5
289,787 + +0.8
289,788 - +0.5
289,788 - +0.2
289,831 + -1.4
289,831 + -0.1
289,832 - +0.2
289,832 - +0.2
289,832 - -0.5
289,832 - +0.4
289,832 - -0.5
289,971 + +0.2
289,972 - +0.2
290,136 - RR42_RS01280 0.11 -0.8
290,136 - RR42_RS01280 0.11 +0.9
290,139 + RR42_RS01280 0.11 -0.9
290,139 + RR42_RS01280 0.11 +0.5
290,139 + RR42_RS01280 0.11 +0.3
290,140 - RR42_RS01280 0.11 +0.8
290,140 - RR42_RS01280 0.11 -0.3
290,140 - RR42_RS01280 0.11 -0.1
290,241 + RR42_RS01280 0.17 +1.2
290,241 + RR42_RS01280 0.17 +0.7
290,241 + RR42_RS01280 0.17 +0.5
290,265 + RR42_RS01280 0.19 -0.9
290,323 - RR42_RS01280 0.22 -0.9

Or see this region's nucleotide sequence