Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11185

Experiment: R2A pH6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH6
2,485,652	+		LRK54_RS11180	0.48	-0.6
2,485,652	+		LRK54_RS11180	0.48	+0.9
2,485,652	+		LRK54_RS11180	0.48	-1.1
2,485,652	+		LRK54_RS11180	0.48	+0.5
2,485,652	+		LRK54_RS11180	0.48	-0.0
2,485,652	+		LRK54_RS11180	0.48	+0.1
2,485,652	+		LRK54_RS11180	0.48	+0.1
2,485,652	+		LRK54_RS11180	0.48	+0.2
2,485,652	+		LRK54_RS11180	0.48	+1.6
2,485,652	+		LRK54_RS11180	0.48	-0.7
2,485,652	+		LRK54_RS11180	0.48	+0.7
2,485,652	+		LRK54_RS11180	0.48	-0.9
2,485,652	+		LRK54_RS11180	0.48	+2.1
2,485,652	+		LRK54_RS11180	0.48	+0.7
2,485,653	-		LRK54_RS11180	0.49	+0.2
2,485,653	-		LRK54_RS11180	0.49	+0.4
2,485,653	-		LRK54_RS11180	0.49	-0.0
2,485,653	-		LRK54_RS11180	0.49	-0.2
2,485,653	-		LRK54_RS11180	0.49	+0.5
2,485,653	-		LRK54_RS11180	0.49	+0.9
2,485,653	-		LRK54_RS11180	0.49	+0.5
2,485,653	-		LRK54_RS11180	0.49	-1.2
2,485,653	-		LRK54_RS11180	0.49	+0.4
2,485,760	+		LRK54_RS11180	0.55	-0.7
2,485,760	+		LRK54_RS11180	0.55	-0.1
2,485,760	+		LRK54_RS11180	0.55	+1.0
2,485,761	-		LRK54_RS11180	0.55	-0.4
2,485,761	-		LRK54_RS11180	0.55	+0.0
2,485,761	-		LRK54_RS11180	0.55	-0.8
2,485,761	-		LRK54_RS11180	0.55	-0.3
2,486,082	-		LRK54_RS11180	0.75	+1.1
2,486,082	-		LRK54_RS11180	0.75	+0.5
2,486,279	+		LRK54_RS11180	0.88	-0.5
2,486,279	+		LRK54_RS11180	0.88	-0.1
2,486,280	-		LRK54_RS11180	0.88	+1.4
2,486,510	+				+0.9
2,486,510	+				-0.9
2,486,510	+				+0.1
2,486,510	+				-0.5
2,486,510	+				-0.8
2,486,510	+				-0.4
2,486,510	+				-1.0
2,486,511	-				-0.1
2,486,511	-				+0.4
2,486,511	-				+0.5
2,486,511	-				-0.1
2,486,511	-				-0.1
2,486,511	-				-0.2
2,486,511	-				-1.0
2,486,511	-				+1.5
2,486,511	-				-0.2
2,486,511	-				+0.3
2,486,511	-				+1.1
2,486,511	-				-0.6
2,486,511	-				+0.9
2,486,737	+		LRK54_RS11185	0.37	+0.7
2,486,743	+		LRK54_RS11185	0.39	+1.3
2,486,743	+		LRK54_RS11185	0.39	-0.5
2,486,743	+		LRK54_RS11185	0.39	+0.1
2,486,743	+		LRK54_RS11185	0.39	-0.7
2,486,743	+		LRK54_RS11185	0.39	-1.4
2,486,743	+		LRK54_RS11185	0.39	+0.0
2,486,743	+		LRK54_RS11185	0.39	+0.0
2,486,743	+		LRK54_RS11185	0.39	-0.1
2,486,743	+		LRK54_RS11185	0.39	-0.9
2,486,743	+		LRK54_RS11185	0.39	+0.3
2,486,743	+		LRK54_RS11185	0.39	-0.6
2,486,743	+		LRK54_RS11185	0.39	-0.2
2,486,743	+		LRK54_RS11185	0.39	+0.8
2,486,743	+		LRK54_RS11185	0.39	-0.7
2,486,743	+		LRK54_RS11185	0.39	+0.9
2,486,743	+		LRK54_RS11185	0.39	+1.4
2,486,743	+		LRK54_RS11185	0.39	-0.1
2,486,743	+		LRK54_RS11185	0.39	+0.8
2,486,743	+		LRK54_RS11185	0.39	-0.3
2,486,743	+		LRK54_RS11185	0.39	+0.1
2,486,743	+		LRK54_RS11185	0.39	+1.3
2,486,743	+		LRK54_RS11185	0.39	-0.7
2,486,743	+		LRK54_RS11185	0.39	+1.2
2,486,743	+		LRK54_RS11185	0.39	-1.6
2,486,743	+		LRK54_RS11185	0.39	+0.4
2,486,743	+		LRK54_RS11185	0.39	+0.5
2,486,743	+		LRK54_RS11185	0.39	+2.4
2,486,743	+		LRK54_RS11185	0.39	+0.7
2,486,743	+		LRK54_RS11185	0.39	-0.5
2,486,744	-		LRK54_RS11185	0.39	-0.2
2,486,744	-		LRK54_RS11185	0.39	-0.5
2,486,744	-		LRK54_RS11185	0.39	+0.0
2,486,744	-		LRK54_RS11185	0.39	-0.1
2,486,744	-		LRK54_RS11185	0.39	+0.4
2,486,744	-		LRK54_RS11185	0.39	+0.3
2,486,744	-		LRK54_RS11185	0.39	-0.4
2,486,744	-		LRK54_RS11185	0.39	-0.7
2,486,744	-		LRK54_RS11185	0.39	+1.4
2,486,744	-		LRK54_RS11185	0.39	+0.4
2,486,744	-		LRK54_RS11185	0.39	+0.2
2,486,744	-		LRK54_RS11185	0.39	+0.2
2,486,744	-		LRK54_RS11185	0.39	-0.9
2,486,744	-		LRK54_RS11185	0.39	+0.2
2,486,744	-		LRK54_RS11185	0.39	+0.2
2,486,744	-		LRK54_RS11185	0.39	-0.7
2,486,744	-		LRK54_RS11185	0.39	+0.4
2,486,744	-		LRK54_RS11185	0.39	-0.1
2,486,744	-		LRK54_RS11185	0.39	-0.3
2,486,744	-		LRK54_RS11185	0.39	+0.5
2,486,744	-		LRK54_RS11185	0.39	+0.4
2,486,744	-		LRK54_RS11185	0.39	+0.2
2,486,744	-		LRK54_RS11185	0.39	+0.0
2,486,744	-		LRK54_RS11185	0.39	+1.4
2,486,744	-		LRK54_RS11185	0.39	+0.9
2,486,744	-		LRK54_RS11185	0.39	-0.2
2,486,744	-		LRK54_RS11185	0.39	+0.0
2,486,744	-		LRK54_RS11185	0.39	-1.8
2,486,744	-		LRK54_RS11185	0.39	-1.1
2,486,744	-		LRK54_RS11185	0.39	+0.9
2,486,744	-		LRK54_RS11185	0.39	+0.4
2,486,744	-		LRK54_RS11185	0.39	-1.3
2,486,774	+		LRK54_RS11185	0.48	-0.2
2,486,794	+		LRK54_RS11185	0.55	-0.2
2,486,794	+		LRK54_RS11185	0.55	-0.4
2,486,794	+		LRK54_RS11185	0.55	-0.1
2,486,795	-		LRK54_RS11185	0.55	-0.9
2,486,795	-		LRK54_RS11185	0.55	+1.8
2,486,795	-		LRK54_RS11185	0.55	+0.1
2,486,795	-		LRK54_RS11185	0.55	+0.3
2,486,845	+		LRK54_RS11185	0.70	+0.8
2,486,845	+		LRK54_RS11185	0.70	-0.3
2,486,845	+		LRK54_RS11185	0.70	-0.3
2,486,846	-		LRK54_RS11185	0.71	-0.4
2,486,846	-		LRK54_RS11185	0.71	+0.5
2,486,846	-		LRK54_RS11185	0.71	+0.8
2,486,846	-		LRK54_RS11185	0.71	+1.2
2,486,846	-		LRK54_RS11185	0.71	+2.4
2,486,846	-		LRK54_RS11185	0.71	+2.4
2,486,881	+		LRK54_RS11185	0.82	-0.8
2,486,881	+		LRK54_RS11185	0.82	-1.0
2,486,923	-				-0.3
2,486,998	+				-1.3
2,486,999	-				-1.5
2,486,999	-				+0.4
2,486,999	-				-0.5
2,486,999	-				+0.4
2,486,999	-				+0.4
2,486,999	-				+0.5
2,486,999	-				-0.6
2,486,999	-				+0.2
2,486,999	-				-0.1
2,487,041	+				+0.2
2,487,071	+				-0.2
2,487,072	-				+1.6
2,487,072	-				-0.8
2,487,072	-				-0.4
2,487,239	+		LRK54_RS11190	0.32	+0.1
2,487,239	+		LRK54_RS11190	0.32	+0.8
2,487,239	+		LRK54_RS11190	0.32	+1.3
2,487,239	+		LRK54_RS11190	0.32	-1.1
2,487,239	+		LRK54_RS11190	0.32	+0.1
2,487,239	+		LRK54_RS11190	0.32	-0.2
2,487,239	+		LRK54_RS11190	0.32	-0.4
2,487,239	+		LRK54_RS11190	0.32	+0.2
2,487,239	+		LRK54_RS11190	0.32	-1.1
2,487,240	-		LRK54_RS11190	0.32	-0.1
2,487,240	-		LRK54_RS11190	0.32	-1.4
2,487,240	-		LRK54_RS11190	0.32	+0.4
2,487,240	-		LRK54_RS11190	0.32	+0.7
2,487,240	-		LRK54_RS11190	0.32	+0.3
2,487,398	+		LRK54_RS11190	0.55	-0.5
2,487,398	+		LRK54_RS11190	0.55	-1.4
2,487,398	+		LRK54_RS11190	0.55	-0.2
2,487,399	-		LRK54_RS11190	0.55	+0.0
2,487,399	-		LRK54_RS11190	0.55	+1.0
2,487,399	-		LRK54_RS11190	0.55	+1.2
2,487,399	-		LRK54_RS11190	0.55	+0.7
2,487,399	-		LRK54_RS11190	0.55	+0.2
2,487,410	+		LRK54_RS11190	0.57	-0.7
2,487,410	+		LRK54_RS11190	0.57	+1.3
2,487,410	+		LRK54_RS11190	0.57	+0.5
2,487,410	+		LRK54_RS11190	0.57	-0.4
2,487,410	+		LRK54_RS11190	0.57	-0.3
2,487,410	+		LRK54_RS11190	0.57	-0.2
2,487,410	+		LRK54_RS11190	0.57	-0.4
2,487,410	+		LRK54_RS11190	0.57	+0.1
2,487,410	+		LRK54_RS11190	0.57	+0.7
2,487,410	+		LRK54_RS11190	0.57	-0.2
2,487,410	+		LRK54_RS11190	0.57	+0.3
2,487,410	+		LRK54_RS11190	0.57	+0.5
2,487,410	+		LRK54_RS11190	0.57	+0.7
2,487,410	+		LRK54_RS11190	0.57	+0.6
2,487,410	+		LRK54_RS11190	0.57	-0.1
2,487,411	-		LRK54_RS11190	0.57	+0.5
2,487,411	-		LRK54_RS11190	0.57	-0.4
2,487,411	-		LRK54_RS11190	0.57	+0.1
2,487,411	-		LRK54_RS11190	0.57	-0.0
2,487,411	-		LRK54_RS11190	0.57	+0.1
2,487,411	-		LRK54_RS11190	0.57	+0.8
2,487,411	-		LRK54_RS11190	0.57	+0.3
2,487,411	-		LRK54_RS11190	0.57	-0.4
2,487,411	-		LRK54_RS11190	0.57	-0.3
2,487,411	-		LRK54_RS11190	0.57	-0.8
2,487,411	-		LRK54_RS11190	0.57	+1.1
2,487,482	+		LRK54_RS11190	0.68	+1.3
2,487,482	+		LRK54_RS11190	0.68	+0.4
2,487,482	+		LRK54_RS11190	0.68	+1.0
2,487,482	+		LRK54_RS11190	0.68	+0.3
2,487,482	+		LRK54_RS11190	0.68	-0.8
2,487,482	+		LRK54_RS11190	0.68	+0.6
2,487,482	+		LRK54_RS11190	0.68	+0.5
2,487,483	-		LRK54_RS11190	0.68	+0.0
2,487,483	-		LRK54_RS11190	0.68	-1.0
2,487,483	-		LRK54_RS11190	0.68	-1.2
2,487,483	-		LRK54_RS11190	0.68	-0.2
2,487,483	-		LRK54_RS11190	0.68	-0.8
2,487,483	-		LRK54_RS11190	0.68	+0.4
2,487,483	-		LRK54_RS11190	0.68	-0.5
2,487,620	+		LRK54_RS11190	0.88	-0.7
2,487,621	-		LRK54_RS11190	0.89	+1.4
2,487,621	-		LRK54_RS11190	0.89	+0.4
2,487,621	-		LRK54_RS11190	0.89	+1.4
2,487,621	-		LRK54_RS11190	0.89	+0.8
2,487,621	-		LRK54_RS11190	0.89	-1.0
2,487,784	-				-0.2
2,487,784	-				-0.0
2,487,790	+				-0.1
2,487,790	+				-1.3
2,487,790	+				-0.3
2,487,790	+				-0.4
2,487,790	+				-1.1
2,487,790	+				+0.1
2,487,790	+				-1.1
2,487,790	+				-0.9
2,487,790	+				-0.5
2,487,791	-				-0.1
2,487,791	-				-0.4
2,487,791	-				+0.7
2,487,791	-				-2.0
2,487,791	-				+0.1
2,487,791	-				+1.4
2,487,791	-				-2.6
2,487,791	-				-0.1
2,487,791	-				+1.4
2,487,791	-				+0.4
2,487,791	-				+2.0
2,487,791	-				-0.3
2,487,791	-				-0.6
2,487,791	-				+2.4
2,487,791	-				+1.6
2,487,871	+				+0.4
2,487,871	+				-0.8
2,487,871	+				-0.6
2,487,872	-				+0.4
2,487,872	-				-1.2
2,487,872	-				-0.1
2,487,872	-				+0.6
2,487,872	-				+0.6