Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05190

Experiment: R2A pH6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH6
1,113,387	+		LRK54_RS05185	0.47	-0.4
1,113,387	+		LRK54_RS05185	0.47	+2.1
1,113,387	+		LRK54_RS05185	0.47	-0.3
1,113,387	+		LRK54_RS05185	0.47	-0.4
1,113,387	+		LRK54_RS05185	0.47	-1.7
1,113,387	+		LRK54_RS05185	0.47	-1.1
1,113,388	-		LRK54_RS05185	0.47	-0.8
1,113,388	-		LRK54_RS05185	0.47	-0.3
1,113,388	-		LRK54_RS05185	0.47	-1.5
1,113,388	-		LRK54_RS05185	0.47	-0.5
1,113,388	-		LRK54_RS05185	0.47	-1.0
1,113,388	-		LRK54_RS05185	0.47	-0.6
1,113,396	+		LRK54_RS05185	0.48	-0.6
1,113,396	+		LRK54_RS05185	0.48	+0.9
1,113,396	+		LRK54_RS05185	0.48	-1.6
1,113,396	+		LRK54_RS05185	0.48	-0.3
1,113,396	+		LRK54_RS05185	0.48	-2.1
1,113,396	+		LRK54_RS05185	0.48	-1.7
1,113,396	+		LRK54_RS05185	0.48	+1.5
1,113,396	+		LRK54_RS05185	0.48	+1.3
1,113,396	+		LRK54_RS05185	0.48	-0.3
1,113,397	-		LRK54_RS05185	0.48	-0.8
1,113,397	-		LRK54_RS05185	0.48	+0.8
1,113,397	-		LRK54_RS05185	0.48	-0.1
1,113,397	-		LRK54_RS05185	0.48	-0.4
1,113,397	-		LRK54_RS05185	0.48	-0.3
1,113,397	-		LRK54_RS05185	0.48	+0.7
1,113,412	-		LRK54_RS05185	0.49	+0.2
1,113,425	+		LRK54_RS05185	0.50	+0.5
1,113,426	-		LRK54_RS05185	0.50	+0.7
1,113,426	-		LRK54_RS05185	0.50	+1.9
1,113,427	+		LRK54_RS05185	0.50	+0.6
1,113,429	+		LRK54_RS05185	0.50	+0.3
1,113,429	+		LRK54_RS05185	0.50	-0.9
1,113,429	+		LRK54_RS05185	0.50	-0.0
1,113,429	+		LRK54_RS05185	0.50	+0.0
1,113,429	+		LRK54_RS05185	0.50	-1.0
1,113,429	+		LRK54_RS05185	0.50	-0.2
1,113,429	+		LRK54_RS05185	0.50	-1.4
1,113,429	+		LRK54_RS05185	0.50	-0.5
1,113,429	+		LRK54_RS05185	0.50	-0.1
1,113,429	+		LRK54_RS05185	0.50	+0.2
1,113,429	+		LRK54_RS05185	0.50	+0.3
1,113,429	+		LRK54_RS05185	0.50	+0.9
1,113,429	+		LRK54_RS05185	0.50	-1.2
1,113,429	+		LRK54_RS05185	0.50	-0.5
1,113,429	+		LRK54_RS05185	0.50	+0.4
1,113,429	+		LRK54_RS05185	0.50	+0.0
1,113,429	+		LRK54_RS05185	0.50	+0.5
1,113,429	+		LRK54_RS05185	0.50	+1.6
1,113,429	+		LRK54_RS05185	0.50	-0.3
1,113,429	+		LRK54_RS05185	0.50	-0.3
1,113,429	+		LRK54_RS05185	0.50	-0.9
1,113,429	+		LRK54_RS05185	0.50	-0.1
1,113,429	+		LRK54_RS05185	0.50	+0.2
1,113,429	+		LRK54_RS05185	0.50	-0.1
1,113,430	-		LRK54_RS05185	0.50	+2.5
1,113,430	-		LRK54_RS05185	0.50	+0.6
1,113,430	-		LRK54_RS05185	0.50	+0.2
1,113,430	-		LRK54_RS05185	0.50	+1.9
1,113,430	-		LRK54_RS05185	0.50	-0.4
1,113,430	-		LRK54_RS05185	0.50	+0.4
1,113,430	-		LRK54_RS05185	0.50	-0.2
1,113,430	-		LRK54_RS05185	0.50	-0.6
1,113,430	-		LRK54_RS05185	0.50	+0.2
1,113,430	-		LRK54_RS05185	0.50	+2.0
1,113,430	-		LRK54_RS05185	0.50	-0.2
1,113,430	-		LRK54_RS05185	0.50	+0.2
1,113,430	-		LRK54_RS05185	0.50	+0.4
1,113,469	-		LRK54_RS05185	0.53	-0.4
1,113,510	+		LRK54_RS05185	0.56	+1.0
1,113,510	+		LRK54_RS05185	0.56	+0.5
1,113,510	+		LRK54_RS05185	0.56	-0.0
1,113,510	+		LRK54_RS05185	0.56	+1.9
1,113,510	+		LRK54_RS05185	0.56	-0.7
1,113,510	+		LRK54_RS05185	0.56	+1.9
1,113,510	+		LRK54_RS05185	0.56	+0.3
1,113,511	-		LRK54_RS05185	0.56	-0.7
1,113,511	-		LRK54_RS05185	0.56	-0.2
1,113,511	-		LRK54_RS05185	0.56	+0.3
1,113,525	+		LRK54_RS05185	0.57	+0.3
1,113,525	+		LRK54_RS05185	0.57	-1.3
1,113,525	+		LRK54_RS05185	0.57	+0.8
1,113,525	+		LRK54_RS05185	0.57	+0.6
1,113,525	+		LRK54_RS05185	0.57	-0.5
1,113,525	+		LRK54_RS05185	0.57	+0.7
1,113,525	+		LRK54_RS05185	0.57	+0.5
1,113,525	+		LRK54_RS05185	0.57	+0.2
1,113,526	-		LRK54_RS05185	0.57	+0.6
1,113,526	-		LRK54_RS05185	0.57	-0.6
1,113,526	-		LRK54_RS05185	0.57	+0.3
1,113,526	-		LRK54_RS05185	0.57	-2.8
1,113,526	-		LRK54_RS05185	0.57	-0.3
1,113,526	-		LRK54_RS05185	0.57	-0.1
1,113,526	-		LRK54_RS05185	0.57	+0.4
1,113,526	-		LRK54_RS05185	0.57	-0.5
1,113,633	+		LRK54_RS05185	0.65	-1.8
1,113,633	+		LRK54_RS05185	0.65	+0.5
1,113,633	+		LRK54_RS05185	0.65	+0.6
1,113,633	+		LRK54_RS05185	0.65	+1.0
1,113,645	+		LRK54_RS05185	0.66	-1.0
1,113,645	+		LRK54_RS05185	0.66	-1.3
1,113,645	+		LRK54_RS05185	0.66	-0.2
1,113,645	+		LRK54_RS05185	0.66	-1.0
1,113,645	+		LRK54_RS05185	0.66	+0.4
1,113,645	+		LRK54_RS05185	0.66	+1.3
1,113,645	+		LRK54_RS05185	0.66	-0.3
1,113,645	+		LRK54_RS05185	0.66	-0.2
1,113,645	+		LRK54_RS05185	0.66	-0.1
1,113,645	+		LRK54_RS05185	0.66	-0.3
1,113,645	+		LRK54_RS05185	0.66	+0.7
1,113,645	+		LRK54_RS05185	0.66	+0.7
1,113,645	+		LRK54_RS05185	0.66	-0.5
1,113,645	+		LRK54_RS05185	0.66	-0.7
1,113,646	-		LRK54_RS05185	0.66	-0.6
1,113,646	-		LRK54_RS05185	0.66	-0.3
1,113,646	-		LRK54_RS05185	0.66	+0.5
1,113,646	-		LRK54_RS05185	0.66	-0.4
1,113,646	-		LRK54_RS05185	0.66	-0.6
1,113,646	-		LRK54_RS05185	0.66	+1.1
1,113,646	-		LRK54_RS05185	0.66	-2.2
1,113,646	-		LRK54_RS05185	0.66	-0.5
1,113,646	-		LRK54_RS05185	0.66	-0.2
1,113,646	-		LRK54_RS05185	0.66	-0.5
1,113,646	-		LRK54_RS05185	0.66	+2.5
1,113,646	-		LRK54_RS05185	0.66	-1.4
1,113,646	-		LRK54_RS05185	0.66	-1.1
1,113,646	-		LRK54_RS05185	0.66	+0.7
1,113,646	-		LRK54_RS05185	0.66	-0.0
1,113,649	+		LRK54_RS05185	0.66	+0.6
1,113,651	+		LRK54_RS05185	0.66	+0.3
1,113,651	+		LRK54_RS05185	0.66	+1.7
1,113,651	+		LRK54_RS05185	0.66	-0.2
1,113,651	+		LRK54_RS05185	0.66	+0.9
1,113,651	+		LRK54_RS05185	0.66	-0.5
1,113,651	+		LRK54_RS05185	0.66	-0.1
1,113,651	+		LRK54_RS05185	0.66	-0.5
1,113,651	+		LRK54_RS05185	0.66	-0.6
1,113,651	+		LRK54_RS05185	0.66	-1.8
1,113,652	-		LRK54_RS05185	0.66	-0.3
1,113,652	-		LRK54_RS05185	0.66	-0.2
1,113,652	-		LRK54_RS05185	0.66	-0.0
1,113,652	-		LRK54_RS05185	0.66	+0.5
1,113,652	-		LRK54_RS05185	0.66	-0.1
1,113,652	-		LRK54_RS05185	0.66	-0.4
1,113,687	+		LRK54_RS05185	0.69	+1.9
1,113,687	+		LRK54_RS05185	0.69	+1.5
1,113,687	+		LRK54_RS05185	0.69	+1.2
1,113,687	+		LRK54_RS05185	0.69	-0.7
1,113,687	+		LRK54_RS05185	0.69	+0.6
1,113,687	+		LRK54_RS05185	0.69	+0.7
1,113,687	+		LRK54_RS05185	0.69	-0.4
1,113,687	+		LRK54_RS05185	0.69	-0.0
1,113,687	+		LRK54_RS05185	0.69	+0.7
1,113,687	+		LRK54_RS05185	0.69	-1.0
1,113,687	+		LRK54_RS05185	0.69	-0.8
1,113,688	-		LRK54_RS05185	0.69	-0.9
1,113,688	-		LRK54_RS05185	0.69	-0.5
1,113,688	-		LRK54_RS05185	0.69	-1.6
1,113,688	-		LRK54_RS05185	0.69	-0.0
1,113,688	-		LRK54_RS05185	0.69	+0.5
1,113,688	-		LRK54_RS05185	0.69	+0.4
1,113,688	-		LRK54_RS05185	0.69	-0.7
1,113,688	-		LRK54_RS05185	0.69	+0.1
1,113,688	-		LRK54_RS05185	0.69	-1.3
1,113,688	-		LRK54_RS05185	0.69	+0.3
1,113,688	-		LRK54_RS05185	0.69	-2.4
1,113,688	-		LRK54_RS05185	0.69	-0.4
1,113,688	-		LRK54_RS05185	0.69	-0.1
1,113,688	-		LRK54_RS05185	0.69	+1.0
1,113,688	-		LRK54_RS05185	0.69	-1.3
1,113,688	-		LRK54_RS05185	0.69	-0.1
1,113,688	-		LRK54_RS05185	0.69	+0.4
1,113,688	-		LRK54_RS05185	0.69	-1.8
1,113,688	-		LRK54_RS05185	0.69	+0.3
1,113,688	-		LRK54_RS05185	0.69	-2.3
1,113,715	-		LRK54_RS05185	0.71	+1.3
1,113,801	+		LRK54_RS05185	0.77	+0.3
1,113,801	+		LRK54_RS05185	0.77	+1.5
1,113,801	+		LRK54_RS05185	0.77	-0.5
1,113,801	+		LRK54_RS05185	0.77	-0.5
1,113,801	+		LRK54_RS05185	0.77	-1.2
1,113,801	+		LRK54_RS05185	0.77	-0.0
1,113,801	+		LRK54_RS05185	0.77	-1.2
1,113,801	+		LRK54_RS05185	0.77	-0.6
1,113,801	+		LRK54_RS05185	0.77	-0.1
1,113,801	+		LRK54_RS05185	0.77	+0.5
1,113,801	+		LRK54_RS05185	0.77	-0.5
1,113,801	+		LRK54_RS05185	0.77	-1.2
1,113,801	+		LRK54_RS05185	0.77	+0.9
1,113,801	+		LRK54_RS05185	0.77	+0.1
1,113,801	+		LRK54_RS05185	0.77	-0.3
1,113,801	+		LRK54_RS05185	0.77	+0.3
1,113,801	+		LRK54_RS05185	0.77	-0.2
1,113,801	+		LRK54_RS05185	0.77	-0.3
1,113,801	+		LRK54_RS05185	0.77	+0.1
1,113,801	+		LRK54_RS05185	0.77	+0.3
1,113,801	+		LRK54_RS05185	0.77	-0.5
1,113,801	+		LRK54_RS05185	0.77	-2.2
1,113,801	+		LRK54_RS05185	0.77	-0.6
1,113,801	+		LRK54_RS05185	0.77	-1.0
1,113,802	-		LRK54_RS05185	0.78	-0.7
1,113,802	-		LRK54_RS05185	0.78	-0.5
1,113,802	-		LRK54_RS05185	0.78	+0.1
1,113,802	-		LRK54_RS05185	0.78	+0.5
1,113,802	-		LRK54_RS05185	0.78	-0.0
1,113,802	-		LRK54_RS05185	0.78	+1.5
1,113,802	-		LRK54_RS05185	0.78	+0.3
1,113,802	-		LRK54_RS05185	0.78	-0.4
1,113,802	-		LRK54_RS05185	0.78	-0.6
1,113,802	-		LRK54_RS05185	0.78	+0.7
1,113,802	-		LRK54_RS05185	0.78	-1.0
1,113,802	-		LRK54_RS05185	0.78	+0.3
1,113,802	-		LRK54_RS05185	0.78	-0.9
1,113,802	-		LRK54_RS05185	0.78	-0.7
1,113,802	-		LRK54_RS05185	0.78	-0.5
1,113,802	-		LRK54_RS05185	0.78	+1.6
1,113,802	-		LRK54_RS05185	0.78	-2.2
1,113,802	-		LRK54_RS05185	0.78	-0.5
1,113,802	-		LRK54_RS05185	0.78	-2.0
1,113,802	-		LRK54_RS05185	0.78	+1.7
1,113,819	+		LRK54_RS05185	0.79	-0.1
1,113,820	-		LRK54_RS05185	0.79	+0.1
1,113,820	-		LRK54_RS05185	0.79	-1.7
1,113,820	-		LRK54_RS05185	0.79	+0.8
1,113,820	-		LRK54_RS05185	0.79	-0.5
1,113,820	-		LRK54_RS05185	0.79	-0.6
1,113,873	+		LRK54_RS05185	0.83	-0.6
1,113,873	+		LRK54_RS05185	0.83	-0.2
1,113,874	-		LRK54_RS05185	0.83	-0.0
1,113,874	-		LRK54_RS05185	0.83	-1.0
1,113,874	-		LRK54_RS05185	0.83	-0.1
1,113,874	-		LRK54_RS05185	0.83	+1.2
1,113,975	+				-0.5
1,113,975	+				+2.2
1,113,975	+				-1.0
1,113,975	+				+1.1
1,113,975	+				-0.3
1,113,975	+				-0.7
1,113,975	+				+0.2
1,113,975	+				-1.2
1,113,975	+				+0.1
1,113,975	+				-0.0
1,113,975	+				+0.9
1,113,975	+				-0.7
1,113,975	+				-0.1
1,113,975	+				-0.1
1,113,975	+				-0.6
1,113,975	+				-0.3
1,113,976	-				-0.3
1,113,976	-				+1.2
1,113,976	-				-1.0
1,113,976	-				-0.6
1,113,976	-				+0.1
1,113,976	-				-0.3
1,113,976	-				-0.1
1,113,976	-				-0.5
1,113,976	-				+0.3
1,113,976	-				+0.0
1,113,976	-				+1.1
1,113,976	-				-0.2
1,114,216	-				+0.1
1,114,278	+				+0.0
1,114,278	+				-1.4
1,114,278	+				-0.1
1,114,278	+				+1.0
1,114,278	+				-2.1
1,114,278	+				+0.3
1,114,278	+				+0.3
1,114,278	+				+0.3
1,114,279	-				-0.3
1,114,279	-				+0.4
1,114,279	-				-0.3
1,114,280	+				-1.0
1,114,280	+				+1.0
1,114,280	+				-1.0
1,114,280	+				+0.0
1,114,280	+				-1.0
1,114,280	+				+0.6
1,114,280	+				-0.2
1,114,280	+				+0.2
1,114,280	+				-1.0
1,114,280	+				-0.0
1,114,280	+				+0.4
1,114,280	+				-0.6
1,114,280	+				-1.4
1,114,280	+				-1.4
1,114,280	+				-1.0
1,114,280	+				-0.3
1,114,280	+				+0.9
1,114,280	+				-2.0
1,114,280	+				-0.1
1,114,280	+				-0.3
1,114,280	+				-0.7
1,114,280	+				+0.2
1,114,280	+				+0.0
1,114,280	+				+1.2
1,114,281	-				-0.7
1,114,281	-				-0.5
1,114,281	-				-1.1
1,114,281	-				+0.1
1,114,281	-				-0.2
1,114,281	-				-1.0
1,114,281	-				+0.8
1,114,281	-				-1.1
1,114,281	-				+1.4
1,114,281	-				+0.4
1,114,281	-				-1.5
1,114,281	-				+0.8
1,114,281	-				+0.2
1,114,281	-				-0.2
1,114,281	-				-0.1
1,114,329	+				-0.2
1,114,437	+		LRK54_RS05190	0.13	-1.6
1,114,437	+		LRK54_RS05190	0.13	-0.5
1,114,437	+		LRK54_RS05190	0.13	-0.3
1,114,437	+		LRK54_RS05190	0.13	+0.8
1,114,437	+		LRK54_RS05190	0.13	-2.0
1,114,438	-		LRK54_RS05190	0.13	-0.3
1,114,438	-		LRK54_RS05190	0.13	-0.1
1,114,438	-		LRK54_RS05190	0.13	+0.5
1,114,438	-		LRK54_RS05190	0.13	+0.6
1,114,438	-		LRK54_RS05190	0.13	+0.8
1,114,438	-		LRK54_RS05190	0.13	+0.2
1,114,438	-		LRK54_RS05190	0.13	+0.2
1,114,850	+		LRK54_RS05190	0.56	+0.4
1,114,850	+		LRK54_RS05190	0.56	-0.2
1,114,850	+		LRK54_RS05190	0.56	+0.5
1,114,850	+		LRK54_RS05190	0.56	-1.1
1,114,850	+		LRK54_RS05190	0.56	-0.7
1,114,850	+		LRK54_RS05190	0.56	-0.4
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1,114,850	+		LRK54_RS05190	0.56	+2.2
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1,114,850	+		LRK54_RS05190	0.56	-0.1
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1,115,309	+				+1.5
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1,115,309	+				-0.9
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