Experiment: Cisplatin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19335 and HSERO_RS19340 are separated by 9 nucleotides HSERO_RS19340 and HSERO_RS19345 overlap by 17 nucleotides HSERO_RS19345 and HSERO_RS19350 are separated by 58 nucleotides HSERO_RS19350 and HSERO_RS19355 are separated by 89 nucleotides
HSERO_RS19335: HSERO_RS19335 - ABC transporter permease, at 4,433,973 to 4,434,656
_RS19335
HSERO_RS19340: HSERO_RS19340 - amino acid ABC transporter permease, at 4,434,666 to 4,435,316
_RS19340
HSERO_RS19345: HSERO_RS19345 - amino acid ABC transporter ATP-binding protein, at 4,435,300 to 4,436,034
_RS19345
HSERO_RS19350: HSERO_RS19350 - amino acid ABC transporter, at 4,436,093 to 4,436,899
_RS19350
HSERO_RS19355: HSERO_RS19355 - galactarate dehydratase, at 4,436,989 to 4,438,524
_RS19355
Position (kb)
4435
4436
4437 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4434.418 kb on - strand, within HSERO_RS19335 at 4434.418 kb on - strand, within HSERO_RS19335 at 4434.481 kb on - strand, within HSERO_RS19335 at 4434.532 kb on + strand, within HSERO_RS19335 at 4434.573 kb on - strand, within HSERO_RS19335 at 4434.799 kb on + strand, within HSERO_RS19340 at 4434.825 kb on + strand, within HSERO_RS19340 at 4434.848 kb on - strand, within HSERO_RS19340 at 4434.907 kb on + strand, within HSERO_RS19340 at 4434.915 kb on - strand, within HSERO_RS19340 at 4434.938 kb on - strand at 4435.006 kb on - strand, within HSERO_RS19340 at 4435.018 kb on + strand, within HSERO_RS19340 at 4435.042 kb on + strand, within HSERO_RS19340 at 4435.185 kb on + strand, within HSERO_RS19340 at 4435.218 kb on + strand, within HSERO_RS19340 at 4435.317 kb on + strand at 4435.354 kb on + strand at 4435.396 kb on - strand, within HSERO_RS19345 at 4435.426 kb on - strand, within HSERO_RS19345 at 4435.487 kb on - strand, within HSERO_RS19345 at 4435.517 kb on + strand, within HSERO_RS19345 at 4435.565 kb on + strand, within HSERO_RS19345 at 4435.727 kb on - strand, within HSERO_RS19345 at 4435.764 kb on + strand, within HSERO_RS19345 at 4435.802 kb on + strand, within HSERO_RS19345 at 4435.814 kb on + strand, within HSERO_RS19345 at 4435.867 kb on + strand, within HSERO_RS19345 at 4436.109 kb on + strand at 4436.243 kb on + strand, within HSERO_RS19350 at 4436.454 kb on - strand, within HSERO_RS19350 at 4436.501 kb on + strand, within HSERO_RS19350 at 4436.637 kb on + strand, within HSERO_RS19350 at 4436.642 kb on + strand, within HSERO_RS19350 at 4436.761 kb on + strand, within HSERO_RS19350 at 4436.863 kb on + strand at 4436.871 kb on - strand at 4436.874 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml remove 4,434,418 - HSERO_RS19335 0.65 -1.2 4,434,418 - HSERO_RS19335 0.65 -0.3 4,434,481 - HSERO_RS19335 0.74 -1.4 4,434,532 + HSERO_RS19335 0.82 -3.0 4,434,573 - HSERO_RS19335 0.88 -0.6 4,434,799 + HSERO_RS19340 0.20 +0.4 4,434,825 + HSERO_RS19340 0.24 -1.2 4,434,848 - HSERO_RS19340 0.28 +0.0 4,434,907 + HSERO_RS19340 0.37 -0.8 4,434,915 - HSERO_RS19340 0.38 +0.6 4,434,938 - +1.9 4,435,006 - HSERO_RS19340 0.52 -0.1 4,435,018 + HSERO_RS19340 0.54 -1.1 4,435,042 + HSERO_RS19340 0.58 -0.4 4,435,185 + HSERO_RS19340 0.80 -0.8 4,435,218 + HSERO_RS19340 0.85 -1.1 4,435,317 + +1.5 4,435,354 + -0.2 4,435,396 - HSERO_RS19345 0.13 -1.9 4,435,426 - HSERO_RS19345 0.17 -0.2 4,435,487 - HSERO_RS19345 0.25 +2.3 4,435,517 + HSERO_RS19345 0.30 -0.7 4,435,565 + HSERO_RS19345 0.36 -0.7 4,435,727 - HSERO_RS19345 0.58 +0.5 4,435,764 + HSERO_RS19345 0.63 +0.3 4,435,802 + HSERO_RS19345 0.68 +1.5 4,435,814 + HSERO_RS19345 0.70 +0.8 4,435,867 + HSERO_RS19345 0.77 +1.3 4,436,109 + -2.0 4,436,243 + HSERO_RS19350 0.19 +0.2 4,436,454 - HSERO_RS19350 0.45 -2.3 4,436,501 + HSERO_RS19350 0.51 -0.8 4,436,637 + HSERO_RS19350 0.67 -0.2 4,436,642 + HSERO_RS19350 0.68 +1.4 4,436,761 + HSERO_RS19350 0.83 +1.7 4,436,863 + -0.6 4,436,871 - +0.5 4,436,874 + -0.0
Or see this region's nucleotide sequence