Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19345

Experiment: Cisplatin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS19335 and HSERO_RS19340 are separated by 9 nucleotidesHSERO_RS19340 and HSERO_RS19345 overlap by 17 nucleotidesHSERO_RS19345 and HSERO_RS19350 are separated by 58 nucleotidesHSERO_RS19350 and HSERO_RS19355 are separated by 89 nucleotides HSERO_RS19335: HSERO_RS19335 - ABC transporter permease, at 4,433,973 to 4,434,656 _RS19335 HSERO_RS19340: HSERO_RS19340 - amino acid ABC transporter permease, at 4,434,666 to 4,435,316 _RS19340 HSERO_RS19345: HSERO_RS19345 - amino acid ABC transporter ATP-binding protein, at 4,435,300 to 4,436,034 _RS19345 HSERO_RS19350: HSERO_RS19350 - amino acid ABC transporter, at 4,436,093 to 4,436,899 _RS19350 HSERO_RS19355: HSERO_RS19355 - galactarate dehydratase, at 4,436,989 to 4,438,524 _RS19355 Position (kb) 4435 4436 4437Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4434.418 kb on - strand, within HSERO_RS19335at 4434.418 kb on - strand, within HSERO_RS19335at 4434.481 kb on - strand, within HSERO_RS19335at 4434.532 kb on + strand, within HSERO_RS19335at 4434.573 kb on - strand, within HSERO_RS19335at 4434.799 kb on + strand, within HSERO_RS19340at 4434.825 kb on + strand, within HSERO_RS19340at 4434.848 kb on - strand, within HSERO_RS19340at 4434.907 kb on + strand, within HSERO_RS19340at 4434.915 kb on - strand, within HSERO_RS19340at 4434.938 kb on - strandat 4435.006 kb on - strand, within HSERO_RS19340at 4435.018 kb on + strand, within HSERO_RS19340at 4435.042 kb on + strand, within HSERO_RS19340at 4435.185 kb on + strand, within HSERO_RS19340at 4435.218 kb on + strand, within HSERO_RS19340at 4435.317 kb on + strandat 4435.354 kb on + strandat 4435.396 kb on - strand, within HSERO_RS19345at 4435.426 kb on - strand, within HSERO_RS19345at 4435.487 kb on - strand, within HSERO_RS19345at 4435.517 kb on + strand, within HSERO_RS19345at 4435.565 kb on + strand, within HSERO_RS19345at 4435.727 kb on - strand, within HSERO_RS19345at 4435.764 kb on + strand, within HSERO_RS19345at 4435.802 kb on + strand, within HSERO_RS19345at 4435.814 kb on + strand, within HSERO_RS19345at 4435.867 kb on + strand, within HSERO_RS19345at 4436.109 kb on + strandat 4436.243 kb on + strand, within HSERO_RS19350at 4436.454 kb on - strand, within HSERO_RS19350at 4436.501 kb on + strand, within HSERO_RS19350at 4436.637 kb on + strand, within HSERO_RS19350at 4436.642 kb on + strand, within HSERO_RS19350at 4436.761 kb on + strand, within HSERO_RS19350at 4436.863 kb on + strandat 4436.871 kb on - strandat 4436.874 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml
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4,434,418 - HSERO_RS19335 0.65 -1.2
4,434,418 - HSERO_RS19335 0.65 -0.3
4,434,481 - HSERO_RS19335 0.74 -1.4
4,434,532 + HSERO_RS19335 0.82 -3.0
4,434,573 - HSERO_RS19335 0.88 -0.6
4,434,799 + HSERO_RS19340 0.20 +0.4
4,434,825 + HSERO_RS19340 0.24 -1.2
4,434,848 - HSERO_RS19340 0.28 +0.0
4,434,907 + HSERO_RS19340 0.37 -0.8
4,434,915 - HSERO_RS19340 0.38 +0.6
4,434,938 - +1.9
4,435,006 - HSERO_RS19340 0.52 -0.1
4,435,018 + HSERO_RS19340 0.54 -1.1
4,435,042 + HSERO_RS19340 0.58 -0.4
4,435,185 + HSERO_RS19340 0.80 -0.8
4,435,218 + HSERO_RS19340 0.85 -1.1
4,435,317 + +1.5
4,435,354 + -0.2
4,435,396 - HSERO_RS19345 0.13 -1.9
4,435,426 - HSERO_RS19345 0.17 -0.2
4,435,487 - HSERO_RS19345 0.25 +2.3
4,435,517 + HSERO_RS19345 0.30 -0.7
4,435,565 + HSERO_RS19345 0.36 -0.7
4,435,727 - HSERO_RS19345 0.58 +0.5
4,435,764 + HSERO_RS19345 0.63 +0.3
4,435,802 + HSERO_RS19345 0.68 +1.5
4,435,814 + HSERO_RS19345 0.70 +0.8
4,435,867 + HSERO_RS19345 0.77 +1.3
4,436,109 + -2.0
4,436,243 + HSERO_RS19350 0.19 +0.2
4,436,454 - HSERO_RS19350 0.45 -2.3
4,436,501 + HSERO_RS19350 0.51 -0.8
4,436,637 + HSERO_RS19350 0.67 -0.2
4,436,642 + HSERO_RS19350 0.68 +1.4
4,436,761 + HSERO_RS19350 0.83 +1.7
4,436,863 + -0.6
4,436,871 - +0.5
4,436,874 + -0.0

Or see this region's nucleotide sequence