Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17785

Experiment: Cisplatin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS17775 and HSERO_RS17780 overlap by 1 nucleotidesHSERO_RS17780 and HSERO_RS17785 are separated by 55 nucleotidesHSERO_RS17785 and HSERO_RS17790 overlap by 4 nucleotides HSERO_RS17775: HSERO_RS17775 - hypothetical protein, at 4,083,941 to 4,084,711 _RS17775 HSERO_RS17780: HSERO_RS17780 - 50S rRNA methyltransferase, at 4,084,711 to 4,085,181 _RS17780 HSERO_RS17785: HSERO_RS17785 - septum formation inhibitor Maf, at 4,085,237 to 4,085,851 _RS17785 HSERO_RS17790: HSERO_RS17790 - ribonuclease, at 4,085,848 to 4,087,311 _RS17790 Position (kb) 4085 4086Strain fitness (log2 ratio) -2 -1 0 1at 4084.902 kb on + strand, within HSERO_RS17780at 4084.910 kb on - strand, within HSERO_RS17780at 4084.910 kb on - strand, within HSERO_RS17780at 4084.910 kb on - strand, within HSERO_RS17780at 4084.929 kb on + strand, within HSERO_RS17780at 4085.079 kb on + strand, within HSERO_RS17780at 4085.092 kb on - strand, within HSERO_RS17780at 4085.285 kb on - strandat 4085.375 kb on + strand, within HSERO_RS17785at 4085.581 kb on - strand, within HSERO_RS17785at 4085.581 kb on - strand, within HSERO_RS17785at 4085.674 kb on + strand, within HSERO_RS17785

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml
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4,084,902 + HSERO_RS17780 0.41 -1.8
4,084,910 - HSERO_RS17780 0.42 +0.1
4,084,910 - HSERO_RS17780 0.42 +0.3
4,084,910 - HSERO_RS17780 0.42 +0.5
4,084,929 + HSERO_RS17780 0.46 -0.1
4,085,079 + HSERO_RS17780 0.78 -0.9
4,085,092 - HSERO_RS17780 0.81 -0.2
4,085,285 - -0.6
4,085,375 + HSERO_RS17785 0.22 -2.2
4,085,581 - HSERO_RS17785 0.56 +0.2
4,085,581 - HSERO_RS17785 0.56 -0.5
4,085,674 + HSERO_RS17785 0.71 -0.3

Or see this region's nucleotide sequence