Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15830

Experiment: Cisplatin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS15820 and HSERO_RS15825 are separated by 284 nucleotidesHSERO_RS15825 and HSERO_RS15830 are separated by 180 nucleotidesHSERO_RS15830 and HSERO_RS15835 are separated by 128 nucleotides HSERO_RS15820: HSERO_RS15820 - selenide, water dikinase, at 3,612,639 to 3,613,673 _RS15820 HSERO_RS15825: HSERO_RS15825 - tRNA-Asn, at 3,613,958 to 3,614,033 _RS15825 HSERO_RS15830: HSERO_RS15830 - tRNA-Asn, at 3,614,214 to 3,614,289 _RS15830 HSERO_RS15835: HSERO_RS15835 - aspartate aminotransferase, at 3,614,418 to 3,615,635 _RS15835 Position (kb) 3614 3615Strain fitness (log2 ratio) -1 0 1at 3613.238 kb on + strand, within HSERO_RS15820at 3613.356 kb on + strand, within HSERO_RS15820at 3613.390 kb on - strand, within HSERO_RS15820at 3613.623 kb on + strandat 3613.709 kb on - strandat 3613.778 kb on + strandat 3613.803 kb on - strandat 3613.860 kb on + strandat 3614.426 kb on - strandat 3615.179 kb on - strand, within HSERO_RS15835

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml
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3,613,238 + HSERO_RS15820 0.58 +0.5
3,613,356 + HSERO_RS15820 0.69 +1.2
3,613,390 - HSERO_RS15820 0.73 +0.9
3,613,623 + +0.1
3,613,709 - +0.4
3,613,778 + -0.5
3,613,803 - -0.3
3,613,860 + +0.7
3,614,426 - +0.4
3,615,179 - HSERO_RS15835 0.62 -0.8

Or see this region's nucleotide sequence