Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15645

Experiment: Cisplatin 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.003 mg/ml
3,571,189	+				+0.9
3,571,264	+				+0.3
3,571,448	-		HSERO_RS15635	0.65	-1.6
3,571,571	+				+0.7
3,571,791	+		HSERO_RS15640	0.50	-3.3
3,571,848	+		HSERO_RS15640	0.61	-3.3
3,571,856	-		HSERO_RS15640	0.63	-2.1
3,571,856	-		HSERO_RS15640	0.63	-1.6
3,571,926	-		HSERO_RS15640	0.77	+1.1
3,571,931	-		HSERO_RS15640	0.78	+1.2
3,571,938	-		HSERO_RS15640	0.79	-0.5
3,572,126	-				+0.4
3,572,286	-				+0.4
3,572,398	+		HSERO_RS15645	0.13	+0.3
3,572,398	+		HSERO_RS15645	0.13	+0.7
3,572,398	+		HSERO_RS15645	0.13	+2.3
3,572,406	-		HSERO_RS15645	0.13	-0.0
3,572,440	+		HSERO_RS15645	0.15	-0.3
3,572,536	-		HSERO_RS15645	0.20	+0.4
3,572,560	-		HSERO_RS15645	0.22	-0.6
3,572,570	+		HSERO_RS15645	0.22	+0.9
3,572,570	+		HSERO_RS15645	0.22	+0.4
3,572,622	-		HSERO_RS15645	0.25	+0.7
3,572,634	-		HSERO_RS15645	0.25	+1.1
3,572,730	+		HSERO_RS15645	0.31	-0.2
3,572,801	+		HSERO_RS15645	0.34	+0.0
3,572,801	+		HSERO_RS15645	0.34	+0.2
3,572,811	+		HSERO_RS15645	0.35	+0.6
3,572,855	+		HSERO_RS15645	0.37	-2.7
3,572,911	-		HSERO_RS15645	0.40	-0.2
3,572,924	+		HSERO_RS15645	0.41	+1.4
3,572,932	-		HSERO_RS15645	0.41	+0.2
3,572,975	-		HSERO_RS15645	0.44	-0.4
3,573,023	-		HSERO_RS15645	0.46	+0.8
3,573,062	+		HSERO_RS15645	0.48	+0.8
3,573,118	+		HSERO_RS15645	0.51	+0.5
3,573,118	+		HSERO_RS15645	0.51	-1.2
3,573,126	-		HSERO_RS15645	0.52	-0.0
3,573,166	+		HSERO_RS15645	0.54	+0.1
3,573,166	+		HSERO_RS15645	0.54	-0.3
3,573,296	-		HSERO_RS15645	0.61	+0.3
3,573,314	+		HSERO_RS15645	0.61	+1.1
3,573,321	+		HSERO_RS15645	0.62	-0.6
3,573,368	-		HSERO_RS15645	0.64	-0.2
3,573,404	-		HSERO_RS15645	0.66	-0.3
3,573,480	+		HSERO_RS15645	0.70	-0.5
3,573,606	+		HSERO_RS15645	0.77	-0.2
3,573,606	+		HSERO_RS15645	0.77	+0.0
3,573,619	+		HSERO_RS15645	0.78	+0.3
3,573,643	+		HSERO_RS15645	0.79	-0.4
3,573,752	-		HSERO_RS15645	0.85	+1.2
3,573,787	+		HSERO_RS15645	0.87	-2.2
3,573,794	-		HSERO_RS15645	0.87	-0.9
3,573,795	-		HSERO_RS15645	0.87	-0.2
3,573,869	-				+1.8
3,573,926	-				+1.3
3,574,157	+				+0.1
3,574,446	+		HSERO_RS15650	0.18	+1.1
3,574,454	-		HSERO_RS15650	0.19	+0.6
3,574,566	+				+0.4
3,574,574	-		HSERO_RS15650	0.47	-0.0
3,574,757	-		HSERO_RS15650	0.90	+0.9
3,574,886	+				+0.7
3,574,886	+				+1.4
3,574,886	+				-1.5