Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14645
Experiment: Cisplatin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.003 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,316,475 | - | HSERO_RS14640 | 0.67 | -0.4 | |
3,316,492 | + | HSERO_RS14640 | 0.68 | -2.9 | |
3,316,700 | + | HSERO_RS14640 | 0.80 | -1.1 | |
3,316,858 | + | HSERO_RS14640 | 0.89 | +0.1 | |
3,316,914 | - | +0.2 | |||
3,316,955 | - | +0.1 | |||
3,317,158 | - | +2.0 | |||
3,317,158 | - | -1.4 | |||
3,317,255 | - | +0.8 | |||
3,317,320 | + | -0.5 | |||
3,317,320 | + | -0.6 | |||
3,318,254 | - | +0.9 |
Or see this region's nucleotide sequence