Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14645

Experiment: Cisplatin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS14640 and HSERO_RS14645 are separated by 427 nucleotidesHSERO_RS14645 and HSERO_RS14650 are separated by 239 nucleotides HSERO_RS14640: HSERO_RS14640 - peptide chain release factor 3, at 3,315,347 to 3,317,035 _RS14640 HSERO_RS14645: HSERO_RS14645 - inorganic pyrophosphatase, at 3,317,463 to 3,317,996 _RS14645 HSERO_RS14650: HSERO_RS14650 - porphyrin biosynthesis protein, at 3,318,236 to 3,319,435 _RS14650 Position (kb) 3317 3318Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3316.475 kb on - strand, within HSERO_RS14640at 3316.492 kb on + strand, within HSERO_RS14640at 3316.700 kb on + strand, within HSERO_RS14640at 3316.858 kb on + strand, within HSERO_RS14640at 3316.914 kb on - strandat 3316.955 kb on - strandat 3317.158 kb on - strandat 3317.158 kb on - strandat 3317.255 kb on - strandat 3317.320 kb on + strandat 3317.320 kb on + strandat 3318.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml
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3,316,475 - HSERO_RS14640 0.67 -0.4
3,316,492 + HSERO_RS14640 0.68 -2.9
3,316,700 + HSERO_RS14640 0.80 -1.1
3,316,858 + HSERO_RS14640 0.89 +0.1
3,316,914 - +0.2
3,316,955 - +0.1
3,317,158 - +2.0
3,317,158 - -1.4
3,317,255 - +0.8
3,317,320 + -0.5
3,317,320 + -0.6
3,318,254 - +0.9

Or see this region's nucleotide sequence