Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09645

Experiment: Cisplatin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS09640 and HSERO_RS09645 are separated by 93 nucleotidesHSERO_RS09645 and HSERO_RS09650 are separated by 177 nucleotides HSERO_RS09640: HSERO_RS09640 - peptidase, at 2,188,163 to 2,189,641 _RS09640 HSERO_RS09645: HSERO_RS09645 - glutaredoxin, at 2,189,735 to 2,190,028 _RS09645 HSERO_RS09650: HSERO_RS09650 - elongation factor 4, at 2,190,206 to 2,191,999 _RS09650 Position (kb) 2189 2190 2191Strain fitness (log2 ratio) -1 0 1at 2188.882 kb on + strand, within HSERO_RS09640at 2188.931 kb on + strand, within HSERO_RS09640at 2189.373 kb on + strand, within HSERO_RS09640at 2189.487 kb on + strand, within HSERO_RS09640at 2189.574 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml
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2,188,882 + HSERO_RS09640 0.49 -1.0
2,188,931 + HSERO_RS09640 0.52 +0.3
2,189,373 + HSERO_RS09640 0.82 -0.3
2,189,487 + HSERO_RS09640 0.90 -1.6
2,189,574 + +0.4

Or see this region's nucleotide sequence