Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07755
Experiment: Cisplatin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.003 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,775,163 | - | HSERO_RS07745 | 0.16 | +0.2 | |
1,775,196 | + | HSERO_RS07745 | 0.21 | +0.4 | |
1,775,228 | + | HSERO_RS07745 | 0.26 | -0.5 | |
1,775,266 | - | HSERO_RS07745 | 0.32 | -1.1 | |
1,775,278 | - | HSERO_RS07745 | 0.34 | -0.1 | |
1,775,435 | - | HSERO_RS07745 | 0.59 | +0.8 | |
1,775,453 | + | HSERO_RS07745 | 0.62 | +0.4 | |
1,775,512 | - | HSERO_RS07745 | 0.71 | +0.0 | |
1,775,581 | - | HSERO_RS07745 | 0.82 | +0.1 | |
1,776,250 | + | HSERO_RS07755 | 0.20 | -4.2 | |
1,776,346 | - | HSERO_RS07755 | 0.31 | -3.3 | |
1,776,403 | - | HSERO_RS07755 | 0.37 | -1.9 | |
1,776,812 | + | HSERO_RS07755 | 0.83 | -3.5 | |
1,777,002 | - | -0.3 |
Or see this region's nucleotide sequence