Experiment: Cisplatin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS05100 and HSERO_RS05105 are separated by 27 nucleotides HSERO_RS05105 and HSERO_RS05110 are separated by 2 nucleotides HSERO_RS05110 and HSERO_RS05115 are separated by 200 nucleotides
HSERO_RS05100: HSERO_RS05100 - sugar ABC transporter permease, at 1,127,262 to 1,128,275
_RS05100
HSERO_RS05105: HSERO_RS05105 - ribokinase, at 1,128,303 to 1,129,262
_RS05105
HSERO_RS05110: HSERO_RS05110 - RbsD or FucU transport protein, at 1,129,265 to 1,129,717
_RS05110
HSERO_RS05115: HSERO_RS05115 - aldehyde dehydrogenase, at 1,129,918 to 1,132,299
_RS05115
Position (kb) 1128
1129
1130 Strain fitness (log2 ratio) -1
0
1 at 1127.398 kb on - strand, within HSERO_RS05100 at 1127.821 kb on - strand, within HSERO_RS05100 at 1127.872 kb on + strand, within HSERO_RS05100 at 1127.887 kb on - strand, within HSERO_RS05100 at 1127.887 kb on - strand, within HSERO_RS05100 at 1127.958 kb on + strand, within HSERO_RS05100 at 1127.977 kb on - strand, within HSERO_RS05100 at 1128.151 kb on + strand, within HSERO_RS05100 at 1128.379 kb on + strand at 1128.477 kb on + strand, within HSERO_RS05105 at 1128.726 kb on - strand, within HSERO_RS05105 at 1128.764 kb on - strand, within HSERO_RS05105 at 1128.843 kb on + strand, within HSERO_RS05105 at 1129.263 kb on - strand at 1129.314 kb on + strand, within HSERO_RS05110 at 1129.671 kb on + strand, within HSERO_RS05110 at 1129.970 kb on - strand at 1130.025 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml remove 1,127,398 - HSERO_RS05100 0.13 -0.3 1,127,821 - HSERO_RS05100 0.55 +0.4 1,127,872 + HSERO_RS05100 0.60 -1.0 1,127,887 - HSERO_RS05100 0.62 +0.5 1,127,887 - HSERO_RS05100 0.62 -0.5 1,127,958 + HSERO_RS05100 0.69 -0.4 1,127,977 - HSERO_RS05100 0.71 -0.4 1,128,151 + HSERO_RS05100 0.88 -0.1 1,128,379 + +0.2 1,128,477 + HSERO_RS05105 0.18 -0.4 1,128,726 - HSERO_RS05105 0.44 -1.2 1,128,764 - HSERO_RS05105 0.48 -0.6 1,128,843 + HSERO_RS05105 0.56 -1.0 1,129,263 - +0.3 1,129,314 + HSERO_RS05110 0.11 -0.5 1,129,671 + HSERO_RS05110 0.90 +0.1 1,129,970 - -0.1 1,130,025 + -0.7
Or see this region's nucleotide sequence