Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05005

Experiment: Cisplatin 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.003 mg/ml
1,101,219	+				+0.8
1,101,226	+				-0.1
1,101,226	+				-0.2
1,101,230	+				+0.2
1,101,238	-				+0.7
1,101,239	-				-0.0
1,101,239	-				-0.4
1,101,242	+				-0.0
1,101,242	+				-0.6
1,101,244	+				-0.4
1,101,244	+				-0.1
1,101,244	+				+1.3
1,101,244	+				-0.2
1,101,244	+				+0.3
1,101,244	+				+1.0
1,101,244	+				-0.5
1,101,244	+				-0.4
1,101,244	+				+0.1
1,101,244	+				-0.1
1,101,244	+				+0.1
1,101,244	+				-1.2
1,101,244	+				+0.0
1,101,244	+				-0.2
1,101,244	+				-0.2
1,101,244	+				-0.1
1,101,244	+				-0.6
1,101,244	+				-0.4
1,101,244	+				-0.6
1,101,244	+				-0.4
1,101,244	+				+0.1
1,101,244	+				-0.6
1,101,244	+				+0.2
1,101,244	+				-0.1
1,101,244	+				+0.2
1,101,244	+				-0.4
1,101,244	+				-1.4
1,101,244	+				-0.2
1,101,244	+				-0.6
1,101,249	+				-0.1
1,101,252	-				+0.6
1,101,252	-				-0.0
1,101,252	-				-0.2
1,101,252	-				+0.2
1,101,252	-				-0.6
1,101,252	-				-1.8
1,101,252	-				+0.2
1,101,252	-				-0.1
1,101,252	-				-0.2
1,101,252	-				-0.6
1,101,252	-				-0.2
1,101,252	-				+0.7
1,101,252	-				+1.5
1,101,252	-				+0.4
1,101,252	-				-1.5
1,101,252	-				-1.0
1,101,252	-				+0.3
1,101,252	-				+0.4
1,101,252	-				+0.7
1,101,252	-				-0.0
1,101,252	-				+0.9
1,101,252	-				-0.9
1,101,252	-				-1.3
1,101,252	-				+0.9
1,101,252	-				+1.1
1,101,253	-				-1.5
1,101,253	-				+0.7
1,101,301	+				-0.5
1,101,301	+				-0.3
1,101,309	-				+0.8
1,101,309	-				+0.4
1,101,309	-				-0.6
1,101,318	-				+0.3
1,101,334	-				+0.6
1,101,340	+				+0.2
1,101,340	+				+0.2
1,101,347	+				+0.2
1,101,347	+				+0.9
1,101,350	-				+0.2
1,101,355	-				-0.8
1,101,355	-				-3.1
1,101,355	-				+0.9
1,101,376	-				+0.4
1,101,404	-				+0.0
1,101,426	-				+0.0
1,101,467	-		HSERO_RS05000	0.14	-0.9
1,101,484	-		HSERO_RS05000	0.17	-4.3
1,101,484	-		HSERO_RS05000	0.17	+0.9
1,101,504	-		HSERO_RS05000	0.19	-0.5
1,101,545	+		HSERO_RS05000	0.24	+0.1
1,101,563	-		HSERO_RS05000	0.27	+0.4
1,101,572	-		HSERO_RS05000	0.28	-0.4
1,101,582	-		HSERO_RS05000	0.29	-0.5
1,101,621	+		HSERO_RS05000	0.34	-0.1
1,101,667	-		HSERO_RS05000	0.40	-3.0
1,101,678	+		HSERO_RS05000	0.41	-0.5
1,101,679	-		HSERO_RS05000	0.41	-0.6
1,101,747	-		HSERO_RS05000	0.50	-2.8
1,101,971	+		HSERO_RS05000	0.78	-2.2
1,101,979	-		HSERO_RS05000	0.79	+0.6
1,102,017	+		HSERO_RS05000	0.84	-0.2
1,102,049	-		HSERO_RS05000	0.88	-2.2
1,102,049	-		HSERO_RS05000	0.88	-1.5
1,102,080	+				+0.3
1,102,099	+				+1.4
1,102,122	+				+0.0
1,102,122	+				-0.3
1,102,148	+				+0.5
1,102,264	-				-0.5
1,102,276	+				-1.0
1,102,276	+				-1.0
1,102,285	+				-0.0
1,102,302	+		HSERO_RS05005	0.10	+1.1
1,102,400	-		HSERO_RS05005	0.20	-0.5
1,102,447	-		HSERO_RS05005	0.25	-0.6
1,102,503	+		HSERO_RS05005	0.31	-0.3
1,102,526	+		HSERO_RS05005	0.33	-0.5
1,102,533	+		HSERO_RS05005	0.34	-1.4
1,102,613	+		HSERO_RS05005	0.42	-0.7
1,102,700	+				+0.4
1,102,744	-		HSERO_RS05005	0.55	-1.4
1,102,784	+		HSERO_RS05005	0.59	-1.0
1,102,797	-		HSERO_RS05005	0.61	+0.2
1,102,900	-		HSERO_RS05005	0.71	-0.6
1,102,900	-		HSERO_RS05005	0.71	+1.2
1,102,982	-		HSERO_RS05005	0.80	+0.3
1,103,022	+		HSERO_RS05005	0.84	-0.4
1,103,067	-		HSERO_RS05005	0.88	-2.5
1,103,074	+		HSERO_RS05005	0.89	+0.3
1,103,165	+				-3.1
1,103,183	-				+0.5
1,103,266	-				-0.7
1,103,315	+				+0.1
1,103,396	+				-0.6
1,103,404	-				-0.3
1,103,455	-				-0.5
1,103,536	+				-2.2
1,103,536	+				-1.0
1,103,563	+				+1.2
1,103,563	+				-1.2
1,103,571	-				-0.8
1,103,571	-				+0.4
1,103,571	-				+0.7
1,103,571	-				+1.8
1,103,620	+				-1.1
1,103,653	-				-0.4
1,103,711	+				-0.2
1,103,719	-				+0.4
1,103,826	+		HSERO_RS05010	0.10	+0.1
1,103,984	+		HSERO_RS05010	0.14	-0.9
1,104,018	-		HSERO_RS05010	0.14	+0.6