Experiment: Cisplatin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04525 and HSERO_RS04530 overlap by 4 nucleotides HSERO_RS04530 and HSERO_RS04535 are separated by 40 nucleotides HSERO_RS04535 and HSERO_RS04540 overlap by 1 nucleotides HSERO_RS04540 and HSERO_RS04545 are separated by 87 nucleotides HSERO_RS04545 and HSERO_RS04550 overlap by 1 nucleotides
HSERO_RS04525: HSERO_RS04525 - lysozyme, at 991,248 to 991,778
_RS04525
HSERO_RS04530: HSERO_RS04530 - hypothetical protein, at 991,775 to 992,149
_RS04530
HSERO_RS04535: HSERO_RS04535 - tail protein X, at 992,190 to 992,399
_RS04535
HSERO_RS04540: HSERO_RS04540 - head protein, at 992,399 to 992,890
_RS04540
HSERO_RS04545: HSERO_RS04545 - integrase, at 992,978 to 993,697
_RS04545
HSERO_RS04550: HSERO_RS04550 - capsid protein, at 993,697 to 994,740
_RS04550
Position (kb) 992
993 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 991.408 kb on + strand, within HSERO_RS04525 at 991.425 kb on - strand, within HSERO_RS04525 at 991.812 kb on - strand at 991.897 kb on + strand, within HSERO_RS04530 at 991.923 kb on + strand, within HSERO_RS04530 at 992.052 kb on + strand, within HSERO_RS04530 at 992.099 kb on - strand, within HSERO_RS04530 at 992.201 kb on + strand at 992.296 kb on + strand, within HSERO_RS04535 at 992.314 kb on - strand, within HSERO_RS04535 at 992.492 kb on - strand, within HSERO_RS04540 at 992.516 kb on - strand, within HSERO_RS04540 at 992.576 kb on + strand, within HSERO_RS04540 at 992.576 kb on + strand, within HSERO_RS04540 at 992.611 kb on + strand, within HSERO_RS04540 at 992.652 kb on - strand, within HSERO_RS04540 at 992.765 kb on - strand, within HSERO_RS04540 at 992.866 kb on + strand at 993.129 kb on + strand, within HSERO_RS04545 at 993.554 kb on - strand, within HSERO_RS04545
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml remove 991,408 + HSERO_RS04525 0.30 -2.8 991,425 - HSERO_RS04525 0.33 +0.9 991,812 - -0.3 991,897 + HSERO_RS04530 0.33 +0.7 991,923 + HSERO_RS04530 0.39 +1.3 992,052 + HSERO_RS04530 0.74 +0.6 992,099 - HSERO_RS04530 0.86 +2.0 992,201 + +0.9 992,296 + HSERO_RS04535 0.50 +0.9 992,314 - HSERO_RS04535 0.59 +0.9 992,492 - HSERO_RS04540 0.19 +1.5 992,516 - HSERO_RS04540 0.24 +0.8 992,576 + HSERO_RS04540 0.36 +1.1 992,576 + HSERO_RS04540 0.36 +1.8 992,611 + HSERO_RS04540 0.43 +1.1 992,652 - HSERO_RS04540 0.51 +1.2 992,765 - HSERO_RS04540 0.74 +0.8 992,866 + +1.1 993,129 + HSERO_RS04545 0.21 +0.9 993,554 - HSERO_RS04545 0.80 +1.5
Or see this region's nucleotide sequence