Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04435

Experiment: Cisplatin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04430 and HSERO_RS04435 overlap by 1 nucleotidesHSERO_RS04435 and HSERO_RS04440 are separated by 13 nucleotides HSERO_RS04430: HSERO_RS04430 - phage late control protein, at 976,834 to 978,063 _RS04430 HSERO_RS04435: HSERO_RS04435 - oxidoreductase, at 978,063 to 978,590 _RS04435 HSERO_RS04440: HSERO_RS04440 - tail protein, at 978,604 to 981,228 _RS04440 Position (kb) 978 979Strain fitness (log2 ratio) -1 0 1 2 3at 977.268 kb on - strand, within HSERO_RS04430at 977.312 kb on - strand, within HSERO_RS04430at 977.361 kb on + strand, within HSERO_RS04430at 977.474 kb on + strand, within HSERO_RS04430at 977.547 kb on + strand, within HSERO_RS04430at 977.603 kb on - strand, within HSERO_RS04430at 977.626 kb on + strand, within HSERO_RS04430at 977.845 kb on - strand, within HSERO_RS04430at 977.845 kb on - strand, within HSERO_RS04430at 977.933 kb on - strand, within HSERO_RS04430at 977.976 kb on + strandat 977.984 kb on - strandat 978.475 kb on + strand, within HSERO_RS04435at 978.478 kb on - strand, within HSERO_RS04435at 978.546 kb on - strandat 978.641 kb on + strandat 978.892 kb on + strand, within HSERO_RS04440at 978.961 kb on + strand, within HSERO_RS04440at 979.140 kb on - strand, within HSERO_RS04440at 979.194 kb on + strand, within HSERO_RS04440at 979.331 kb on - strand, within HSERO_RS04440at 979.360 kb on + strand, within HSERO_RS04440

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml
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977,268 - HSERO_RS04430 0.35 +1.2
977,312 - HSERO_RS04430 0.39 -0.4
977,361 + HSERO_RS04430 0.43 +1.6
977,474 + HSERO_RS04430 0.52 +0.2
977,547 + HSERO_RS04430 0.58 +1.3
977,603 - HSERO_RS04430 0.63 -0.2
977,626 + HSERO_RS04430 0.64 +0.8
977,845 - HSERO_RS04430 0.82 +0.8
977,845 - HSERO_RS04430 0.82 +3.3
977,933 - HSERO_RS04430 0.89 +1.0
977,976 + +1.0
977,984 - +1.0
978,475 + HSERO_RS04435 0.78 -0.0
978,478 - HSERO_RS04435 0.79 -0.0
978,546 - +0.5
978,641 + +0.5
978,892 + HSERO_RS04440 0.11 +0.0
978,961 + HSERO_RS04440 0.14 +0.9
979,140 - HSERO_RS04440 0.20 +0.5
979,194 + HSERO_RS04440 0.22 +0.3
979,331 - HSERO_RS04440 0.28 +0.6
979,360 + HSERO_RS04440 0.29 +0.3

Or see this region's nucleotide sequence