Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04210

Experiment: Cisplatin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04205 and HSERO_RS04210 are separated by 104 nucleotidesHSERO_RS04210 and HSERO_RS04215 overlap by 37 nucleotidesHSERO_RS04215 and HSERO_RS04220 are separated by 67 nucleotides HSERO_RS04205: HSERO_RS04205 - membrane protein, at 924,300 to 924,962 _RS04205 HSERO_RS04210: HSERO_RS04210 - N-acetylmuramoyl-L-alanine amidase, at 925,067 to 926,428 _RS04210 HSERO_RS04215: HSERO_RS04215 - hydrolase, at 926,392 to 926,877 _RS04215 HSERO_RS04220: HSERO_RS04220 - epoxyqueuosine reductase, at 926,945 to 928,090 _RS04220 Position (kb) 925 926 927Strain fitness (log2 ratio) -2 -1 0 1at 924.096 kb on + strandat 924.296 kb on - strandat 924.359 kb on + strandat 924.363 kb on + strandat 924.380 kb on + strand, within HSERO_RS04205at 924.403 kb on - strandat 924.588 kb on + strand, within HSERO_RS04205at 924.743 kb on - strand, within HSERO_RS04205at 924.761 kb on + strand, within HSERO_RS04205at 924.782 kb on + strand, within HSERO_RS04205at 924.970 kb on - strandat 925.069 kb on + strandat 927.125 kb on + strand, within HSERO_RS04220at 927.125 kb on + strand, within HSERO_RS04220

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml
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924,096 + -2.2
924,296 - +0.9
924,359 + +1.4
924,363 + +0.7
924,380 + HSERO_RS04205 0.12 +0.9
924,403 - +0.3
924,588 + HSERO_RS04205 0.43 +0.7
924,743 - HSERO_RS04205 0.67 +0.0
924,761 + HSERO_RS04205 0.70 +0.4
924,782 + HSERO_RS04205 0.73 +1.2
924,970 - -1.7
925,069 + -0.3
927,125 + HSERO_RS04220 0.16 -0.6
927,125 + HSERO_RS04220 0.16 +0.2

Or see this region's nucleotide sequence