Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03945

Experiment: Cisplatin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03940 and HSERO_RS03945 are separated by 149 nucleotidesHSERO_RS03945 and HSERO_RS03950 are separated by 93 nucleotides HSERO_RS03940: HSERO_RS03940 - hypothetical protein, at 867,372 to 868,112 _RS03940 HSERO_RS03945: HSERO_RS03945 - hypothetical protein, at 868,262 to 868,645 _RS03945 HSERO_RS03950: HSERO_RS03950 - type III secretion HrpQ protein, at 868,739 to 869,773 _RS03950 Position (kb) 868 869Strain fitness (log2 ratio) -2 -1 0 1 2at 867.264 kb on - strandat 867.264 kb on - strandat 867.322 kb on - strandat 867.412 kb on - strandat 867.551 kb on + strand, within HSERO_RS03940at 867.668 kb on + strand, within HSERO_RS03940at 867.894 kb on + strand, within HSERO_RS03940at 867.914 kb on - strand, within HSERO_RS03940at 868.066 kb on + strandat 868.072 kb on - strandat 868.099 kb on - strandat 868.106 kb on + strandat 868.737 kb on - strandat 868.836 kb on + strandat 868.849 kb on - strand, within HSERO_RS03950at 868.870 kb on + strand, within HSERO_RS03950at 868.905 kb on - strand, within HSERO_RS03950at 869.145 kb on + strand, within HSERO_RS03950at 869.551 kb on + strand, within HSERO_RS03950at 869.551 kb on + strand, within HSERO_RS03950

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml
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867,264 - -2.2
867,264 - -0.6
867,322 - +0.2
867,412 - +0.2
867,551 + HSERO_RS03940 0.24 +0.6
867,668 + HSERO_RS03940 0.40 -0.3
867,894 + HSERO_RS03940 0.70 -0.3
867,914 - HSERO_RS03940 0.73 +0.1
868,066 + +2.0
868,072 - -0.0
868,099 - -0.3
868,106 + -0.1
868,737 - +0.3
868,836 + -1.8
868,849 - HSERO_RS03950 0.11 -0.0
868,870 + HSERO_RS03950 0.13 +0.5
868,905 - HSERO_RS03950 0.16 +1.6
869,145 + HSERO_RS03950 0.39 -0.7
869,551 + HSERO_RS03950 0.78 -1.5
869,551 + HSERO_RS03950 0.78 -0.5

Or see this region's nucleotide sequence