Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24695

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS24690 and CA265_RS24695 are separated by 279 nucleotidesCA265_RS24695 and CA265_RS24700 are separated by 427 nucleotidesCA265_RS24700 and CA265_RS24705 are separated by 157 nucleotides CA265_RS24690: CA265_RS24690 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 6,025,407 to 6,026,987 _RS24690 CA265_RS24695: CA265_RS24695 - hypothetical protein, at 6,027,267 to 6,029,597 _RS24695 CA265_RS24700: CA265_RS24700 - hypothetical protein, at 6,030,025 to 6,030,426 _RS24700 CA265_RS24705: CA265_RS24705 - carboxypeptidase, at 6,030,584 to 6,032,143 _RS24705 Position (kb) 6027 6028 6029 6030Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6026.268 kb on - strand, within CA265_RS24690at 6026.294 kb on + strand, within CA265_RS24690at 6026.317 kb on + strand, within CA265_RS24690at 6026.460 kb on + strand, within CA265_RS24690at 6026.461 kb on - strand, within CA265_RS24690at 6026.461 kb on - strand, within CA265_RS24690at 6026.479 kb on - strand, within CA265_RS24690at 6026.504 kb on - strand, within CA265_RS24690at 6026.582 kb on + strand, within CA265_RS24690at 6026.649 kb on + strand, within CA265_RS24690at 6026.650 kb on - strand, within CA265_RS24690at 6026.710 kb on - strand, within CA265_RS24690at 6026.710 kb on - strand, within CA265_RS24690at 6026.710 kb on - strand, within CA265_RS24690at 6026.729 kb on - strand, within CA265_RS24690at 6026.729 kb on - strand, within CA265_RS24690at 6026.760 kb on - strand, within CA265_RS24690at 6026.760 kb on - strand, within CA265_RS24690at 6026.765 kb on + strand, within CA265_RS24690at 6026.832 kb on - strandat 6026.837 kb on - strandat 6026.837 kb on - strandat 6026.837 kb on - strandat 6026.919 kb on + strandat 6026.922 kb on - strandat 6026.971 kb on + strandat 6026.982 kb on - strandat 6027.050 kb on + strandat 6027.059 kb on + strandat 6027.065 kb on - strandat 6027.098 kb on + strandat 6027.106 kb on + strandat 6027.107 kb on - strandat 6027.107 kb on - strandat 6027.220 kb on + strandat 6027.253 kb on + strandat 6027.254 kb on - strandat 6027.275 kb on + strandat 6027.350 kb on + strandat 6027.364 kb on + strandat 6027.504 kb on + strand, within CA265_RS24695at 6027.550 kb on + strand, within CA265_RS24695at 6027.550 kb on + strand, within CA265_RS24695at 6027.755 kb on - strand, within CA265_RS24695at 6027.782 kb on + strandat 6027.782 kb on + strand, within CA265_RS24695at 6027.849 kb on + strand, within CA265_RS24695at 6027.861 kb on - strand, within CA265_RS24695at 6027.870 kb on + strand, within CA265_RS24695at 6027.870 kb on + strand, within CA265_RS24695at 6027.870 kb on + strand, within CA265_RS24695at 6027.871 kb on - strand, within CA265_RS24695at 6027.871 kb on - strand, within CA265_RS24695at 6027.871 kb on - strand, within CA265_RS24695at 6027.871 kb on - strand, within CA265_RS24695at 6027.871 kb on - strand, within CA265_RS24695at 6027.875 kb on + strand, within CA265_RS24695at 6027.926 kb on - strand, within CA265_RS24695at 6027.968 kb on - strand, within CA265_RS24695at 6028.016 kb on - strand, within CA265_RS24695at 6028.053 kb on + strand, within CA265_RS24695at 6028.053 kb on + strand, within CA265_RS24695at 6028.053 kb on + strand, within CA265_RS24695at 6028.054 kb on - strand, within CA265_RS24695at 6028.182 kb on + strand, within CA265_RS24695at 6028.213 kb on - strand, within CA265_RS24695at 6028.229 kb on + strand, within CA265_RS24695at 6028.238 kb on - strand, within CA265_RS24695at 6028.257 kb on + strand, within CA265_RS24695at 6028.271 kb on + strand, within CA265_RS24695at 6028.345 kb on - strand, within CA265_RS24695at 6028.345 kb on - strand, within CA265_RS24695at 6028.349 kb on + strand, within CA265_RS24695at 6028.349 kb on + strand, within CA265_RS24695at 6028.349 kb on + strand, within CA265_RS24695at 6028.350 kb on - strand, within CA265_RS24695at 6028.379 kb on + strand, within CA265_RS24695at 6028.386 kb on - strand, within CA265_RS24695at 6028.386 kb on - strand, within CA265_RS24695at 6028.415 kb on + strand, within CA265_RS24695at 6028.415 kb on + strand, within CA265_RS24695at 6028.473 kb on + strand, within CA265_RS24695at 6028.474 kb on - strand, within CA265_RS24695at 6028.527 kb on + strand, within CA265_RS24695at 6028.552 kb on + strand, within CA265_RS24695at 6028.589 kb on + strand, within CA265_RS24695at 6028.590 kb on - strand, within CA265_RS24695at 6028.590 kb on - strand, within CA265_RS24695at 6028.638 kb on + strand, within CA265_RS24695at 6028.683 kb on - strand, within CA265_RS24695at 6028.705 kb on - strand, within CA265_RS24695at 6028.705 kb on - strand, within CA265_RS24695at 6028.705 kb on - strand, within CA265_RS24695at 6028.729 kb on - strand, within CA265_RS24695at 6028.820 kb on - strand, within CA265_RS24695at 6028.822 kb on + strandat 6028.823 kb on - strand, within CA265_RS24695at 6028.851 kb on - strand, within CA265_RS24695at 6028.943 kb on + strand, within CA265_RS24695at 6028.944 kb on - strand, within CA265_RS24695at 6028.952 kb on - strand, within CA265_RS24695at 6028.967 kb on + strand, within CA265_RS24695at 6029.009 kb on + strand, within CA265_RS24695at 6029.012 kb on - strand, within CA265_RS24695at 6029.046 kb on - strand, within CA265_RS24695at 6029.103 kb on + strand, within CA265_RS24695at 6029.115 kb on + strand, within CA265_RS24695at 6029.150 kb on + strand, within CA265_RS24695at 6029.154 kb on + strand, within CA265_RS24695at 6029.154 kb on + strand, within CA265_RS24695at 6029.170 kb on - strand, within CA265_RS24695at 6029.187 kb on - strand, within CA265_RS24695at 6029.222 kb on + strand, within CA265_RS24695at 6029.319 kb on + strand, within CA265_RS24695at 6029.476 kb on + strandat 6029.477 kb on - strandat 6029.546 kb on - strandat 6029.546 kb on - strandat 6029.591 kb on - strandat 6029.634 kb on + strandat 6029.722 kb on + strandat 6029.739 kb on - strandat 6029.763 kb on + strandat 6029.805 kb on + strandat 6029.806 kb on - strandat 6029.828 kb on + strandat 6029.829 kb on - strandat 6029.889 kb on - strandat 6029.921 kb on - strandat 6029.921 kb on - strandat 6029.957 kb on - strandat 6029.996 kb on + strandat 6029.997 kb on - strandat 6030.012 kb on + strandat 6030.091 kb on - strand, within CA265_RS24700at 6030.133 kb on - strand, within CA265_RS24700at 6030.140 kb on + strand, within CA265_RS24700at 6030.141 kb on - strand, within CA265_RS24700at 6030.141 kb on - strand, within CA265_RS24700at 6030.220 kb on + strand, within CA265_RS24700at 6030.221 kb on - strand, within CA265_RS24700at 6030.223 kb on - strand, within CA265_RS24700at 6030.334 kb on + strand, within CA265_RS24700at 6030.335 kb on - strand, within CA265_RS24700at 6030.344 kb on - strand, within CA265_RS24700at 6030.378 kb on + strand, within CA265_RS24700at 6030.379 kb on - strand, within CA265_RS24700at 6030.553 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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6,026,268 - CA265_RS24690 0.54 +0.1
6,026,294 + CA265_RS24690 0.56 -0.6
6,026,317 + CA265_RS24690 0.58 -2.0
6,026,460 + CA265_RS24690 0.67 +0.5
6,026,461 - CA265_RS24690 0.67 -0.7
6,026,461 - CA265_RS24690 0.67 +1.1
6,026,479 - CA265_RS24690 0.68 -1.9
6,026,504 - CA265_RS24690 0.69 +0.3
6,026,582 + CA265_RS24690 0.74 -0.2
6,026,649 + CA265_RS24690 0.79 +0.1
6,026,650 - CA265_RS24690 0.79 +0.2
6,026,710 - CA265_RS24690 0.82 -0.8
6,026,710 - CA265_RS24690 0.82 +0.7
6,026,710 - CA265_RS24690 0.82 +0.3
6,026,729 - CA265_RS24690 0.84 -0.0
6,026,729 - CA265_RS24690 0.84 +0.0
6,026,760 - CA265_RS24690 0.86 -0.8
6,026,760 - CA265_RS24690 0.86 +0.6
6,026,765 + CA265_RS24690 0.86 -0.8
6,026,832 - +0.9
6,026,837 - +0.1
6,026,837 - +0.5
6,026,837 - -0.0
6,026,919 + -0.5
6,026,922 - +0.4
6,026,971 + -1.3
6,026,982 - -0.4
6,027,050 + -0.2
6,027,059 + +0.4
6,027,065 - -0.4
6,027,098 + +0.0
6,027,106 + +1.3
6,027,107 - +2.0
6,027,107 - +0.3
6,027,220 + -0.9
6,027,253 + +0.2
6,027,254 - -0.4
6,027,275 + -0.7
6,027,350 + +0.7
6,027,364 + -0.3
6,027,504 + CA265_RS24695 0.10 -1.8
6,027,550 + CA265_RS24695 0.12 +0.9
6,027,550 + CA265_RS24695 0.12 -0.3
6,027,755 - CA265_RS24695 0.21 +1.1
6,027,782 + -0.2
6,027,782 + CA265_RS24695 0.22 -1.4
6,027,849 + CA265_RS24695 0.25 -0.2
6,027,861 - CA265_RS24695 0.25 +0.3
6,027,870 + CA265_RS24695 0.26 +0.3
6,027,870 + CA265_RS24695 0.26 -0.8
6,027,870 + CA265_RS24695 0.26 +0.5
6,027,871 - CA265_RS24695 0.26 +1.1
6,027,871 - CA265_RS24695 0.26 +0.2
6,027,871 - CA265_RS24695 0.26 +0.2
6,027,871 - CA265_RS24695 0.26 +0.7
6,027,871 - CA265_RS24695 0.26 +1.0
6,027,875 + CA265_RS24695 0.26 +0.6
6,027,926 - CA265_RS24695 0.28 -0.6
6,027,968 - CA265_RS24695 0.30 +1.1
6,028,016 - CA265_RS24695 0.32 +0.4
6,028,053 + CA265_RS24695 0.34 +0.3
6,028,053 + CA265_RS24695 0.34 +0.2
6,028,053 + CA265_RS24695 0.34 -1.2
6,028,054 - CA265_RS24695 0.34 +0.1
6,028,182 + CA265_RS24695 0.39 -0.3
6,028,213 - CA265_RS24695 0.41 -1.7
6,028,229 + CA265_RS24695 0.41 +0.7
6,028,238 - CA265_RS24695 0.42 -0.2
6,028,257 + CA265_RS24695 0.42 -0.3
6,028,271 + CA265_RS24695 0.43 +0.8
6,028,345 - CA265_RS24695 0.46 -0.7
6,028,345 - CA265_RS24695 0.46 -0.3
6,028,349 + CA265_RS24695 0.46 +0.6
6,028,349 + CA265_RS24695 0.46 -0.0
6,028,349 + CA265_RS24695 0.46 -0.5
6,028,350 - CA265_RS24695 0.46 -0.1
6,028,379 + CA265_RS24695 0.48 +3.1
6,028,386 - CA265_RS24695 0.48 +0.3
6,028,386 - CA265_RS24695 0.48 -0.3
6,028,415 + CA265_RS24695 0.49 +0.1
6,028,415 + CA265_RS24695 0.49 +1.1
6,028,473 + CA265_RS24695 0.52 -1.1
6,028,474 - CA265_RS24695 0.52 +0.4
6,028,527 + CA265_RS24695 0.54 +0.2
6,028,552 + CA265_RS24695 0.55 +0.5
6,028,589 + CA265_RS24695 0.57 +0.1
6,028,590 - CA265_RS24695 0.57 +0.4
6,028,590 - CA265_RS24695 0.57 -0.4
6,028,638 + CA265_RS24695 0.59 -0.7
6,028,683 - CA265_RS24695 0.61 -0.1
6,028,705 - CA265_RS24695 0.62 -2.4
6,028,705 - CA265_RS24695 0.62 +1.0
6,028,705 - CA265_RS24695 0.62 -0.4
6,028,729 - CA265_RS24695 0.63 -0.6
6,028,820 - CA265_RS24695 0.67 -1.2
6,028,822 + +0.8
6,028,823 - CA265_RS24695 0.67 +1.2
6,028,851 - CA265_RS24695 0.68 -0.2
6,028,943 + CA265_RS24695 0.72 -0.8
6,028,944 - CA265_RS24695 0.72 +0.7
6,028,952 - CA265_RS24695 0.72 +0.2
6,028,967 + CA265_RS24695 0.73 +0.6
6,029,009 + CA265_RS24695 0.75 -0.8
6,029,012 - CA265_RS24695 0.75 +0.5
6,029,046 - CA265_RS24695 0.76 -0.3
6,029,103 + CA265_RS24695 0.79 -1.3
6,029,115 + CA265_RS24695 0.79 -0.5
6,029,150 + CA265_RS24695 0.81 -0.0
6,029,154 + CA265_RS24695 0.81 +0.9
6,029,154 + CA265_RS24695 0.81 -0.2
6,029,170 - CA265_RS24695 0.82 -2.5
6,029,187 - CA265_RS24695 0.82 -0.5
6,029,222 + CA265_RS24695 0.84 +2.8
6,029,319 + CA265_RS24695 0.88 +0.2
6,029,476 + -1.6
6,029,477 - +0.2
6,029,546 - +0.9
6,029,546 - -0.4
6,029,591 - +0.2
6,029,634 + +0.5
6,029,722 + -1.3
6,029,739 - -0.7
6,029,763 + +0.5
6,029,805 + +0.2
6,029,806 - -0.3
6,029,828 + +0.4
6,029,829 - -0.2
6,029,889 - -0.3
6,029,921 - -0.8
6,029,921 - -0.6
6,029,957 - -0.1
6,029,996 + -0.5
6,029,997 - -0.2
6,030,012 + -0.0
6,030,091 - CA265_RS24700 0.16 +0.1
6,030,133 - CA265_RS24700 0.27 -1.4
6,030,140 + CA265_RS24700 0.29 -0.7
6,030,141 - CA265_RS24700 0.29 +2.1
6,030,141 - CA265_RS24700 0.29 +0.8
6,030,220 + CA265_RS24700 0.49 +0.8
6,030,221 - CA265_RS24700 0.49 +0.2
6,030,223 - CA265_RS24700 0.49 -1.4
6,030,334 + CA265_RS24700 0.77 +0.7
6,030,335 - CA265_RS24700 0.77 -0.1
6,030,344 - CA265_RS24700 0.79 +0.8
6,030,378 + CA265_RS24700 0.88 -0.7
6,030,379 - CA265_RS24700 0.88 -2.3
6,030,553 + +0.5

Or see this region's nucleotide sequence