Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24690 and CA265_RS24695 are separated by 279 nucleotides CA265_RS24695 and CA265_RS24700 are separated by 427 nucleotides CA265_RS24700 and CA265_RS24705 are separated by 157 nucleotides
CA265_RS24690: CA265_RS24690 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 6,025,407 to 6,026,987
_RS24690
CA265_RS24695: CA265_RS24695 - hypothetical protein, at 6,027,267 to 6,029,597
_RS24695
CA265_RS24700: CA265_RS24700 - hypothetical protein, at 6,030,025 to 6,030,426
_RS24700
CA265_RS24705: CA265_RS24705 - carboxypeptidase, at 6,030,584 to 6,032,143
_RS24705
Position (kb)
6027
6028
6029
6030 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6026.268 kb on - strand, within CA265_RS24690 at 6026.294 kb on + strand, within CA265_RS24690 at 6026.317 kb on + strand, within CA265_RS24690 at 6026.460 kb on + strand, within CA265_RS24690 at 6026.461 kb on - strand, within CA265_RS24690 at 6026.461 kb on - strand, within CA265_RS24690 at 6026.479 kb on - strand, within CA265_RS24690 at 6026.504 kb on - strand, within CA265_RS24690 at 6026.582 kb on + strand, within CA265_RS24690 at 6026.649 kb on + strand, within CA265_RS24690 at 6026.650 kb on - strand, within CA265_RS24690 at 6026.710 kb on - strand, within CA265_RS24690 at 6026.710 kb on - strand, within CA265_RS24690 at 6026.710 kb on - strand, within CA265_RS24690 at 6026.729 kb on - strand, within CA265_RS24690 at 6026.729 kb on - strand, within CA265_RS24690 at 6026.760 kb on - strand, within CA265_RS24690 at 6026.760 kb on - strand, within CA265_RS24690 at 6026.765 kb on + strand, within CA265_RS24690 at 6026.832 kb on - strand at 6026.837 kb on - strand at 6026.837 kb on - strand at 6026.837 kb on - strand at 6026.919 kb on + strand at 6026.922 kb on - strand at 6026.971 kb on + strand at 6026.982 kb on - strand at 6027.050 kb on + strand at 6027.059 kb on + strand at 6027.065 kb on - strand at 6027.098 kb on + strand at 6027.106 kb on + strand at 6027.107 kb on - strand at 6027.107 kb on - strand at 6027.220 kb on + strand at 6027.253 kb on + strand at 6027.254 kb on - strand at 6027.275 kb on + strand at 6027.350 kb on + strand at 6027.364 kb on + strand at 6027.504 kb on + strand, within CA265_RS24695 at 6027.550 kb on + strand, within CA265_RS24695 at 6027.550 kb on + strand, within CA265_RS24695 at 6027.755 kb on - strand, within CA265_RS24695 at 6027.782 kb on + strand at 6027.782 kb on + strand, within CA265_RS24695 at 6027.849 kb on + strand, within CA265_RS24695 at 6027.861 kb on - strand, within CA265_RS24695 at 6027.870 kb on + strand, within CA265_RS24695 at 6027.870 kb on + strand, within CA265_RS24695 at 6027.870 kb on + strand, within CA265_RS24695 at 6027.871 kb on - strand, within CA265_RS24695 at 6027.871 kb on - strand, within CA265_RS24695 at 6027.871 kb on - strand, within CA265_RS24695 at 6027.871 kb on - strand, within CA265_RS24695 at 6027.871 kb on - strand, within CA265_RS24695 at 6027.875 kb on + strand, within CA265_RS24695 at 6027.926 kb on - strand, within CA265_RS24695 at 6027.968 kb on - strand, within CA265_RS24695 at 6028.016 kb on - strand, within CA265_RS24695 at 6028.053 kb on + strand, within CA265_RS24695 at 6028.053 kb on + strand, within CA265_RS24695 at 6028.053 kb on + strand, within CA265_RS24695 at 6028.054 kb on - strand, within CA265_RS24695 at 6028.182 kb on + strand, within CA265_RS24695 at 6028.213 kb on - strand, within CA265_RS24695 at 6028.229 kb on + strand, within CA265_RS24695 at 6028.238 kb on - strand, within CA265_RS24695 at 6028.257 kb on + strand, within CA265_RS24695 at 6028.271 kb on + strand, within CA265_RS24695 at 6028.345 kb on - strand, within CA265_RS24695 at 6028.345 kb on - strand, within CA265_RS24695 at 6028.349 kb on + strand, within CA265_RS24695 at 6028.349 kb on + strand, within CA265_RS24695 at 6028.349 kb on + strand, within CA265_RS24695 at 6028.350 kb on - strand, within CA265_RS24695 at 6028.379 kb on + strand, within CA265_RS24695 at 6028.386 kb on - strand, within CA265_RS24695 at 6028.386 kb on - strand, within CA265_RS24695 at 6028.415 kb on + strand, within CA265_RS24695 at 6028.415 kb on + strand, within CA265_RS24695 at 6028.473 kb on + strand, within CA265_RS24695 at 6028.474 kb on - strand, within CA265_RS24695 at 6028.527 kb on + strand, within CA265_RS24695 at 6028.552 kb on + strand, within CA265_RS24695 at 6028.589 kb on + strand, within CA265_RS24695 at 6028.590 kb on - strand, within CA265_RS24695 at 6028.590 kb on - strand, within CA265_RS24695 at 6028.638 kb on + strand, within CA265_RS24695 at 6028.683 kb on - strand, within CA265_RS24695 at 6028.705 kb on - strand, within CA265_RS24695 at 6028.705 kb on - strand, within CA265_RS24695 at 6028.705 kb on - strand, within CA265_RS24695 at 6028.729 kb on - strand, within CA265_RS24695 at 6028.820 kb on - strand, within CA265_RS24695 at 6028.822 kb on + strand at 6028.823 kb on - strand, within CA265_RS24695 at 6028.851 kb on - strand, within CA265_RS24695 at 6028.943 kb on + strand, within CA265_RS24695 at 6028.944 kb on - strand, within CA265_RS24695 at 6028.952 kb on - strand, within CA265_RS24695 at 6028.967 kb on + strand, within CA265_RS24695 at 6029.009 kb on + strand, within CA265_RS24695 at 6029.012 kb on - strand, within CA265_RS24695 at 6029.046 kb on - strand, within CA265_RS24695 at 6029.103 kb on + strand, within CA265_RS24695 at 6029.115 kb on + strand, within CA265_RS24695 at 6029.150 kb on + strand, within CA265_RS24695 at 6029.154 kb on + strand, within CA265_RS24695 at 6029.154 kb on + strand, within CA265_RS24695 at 6029.170 kb on - strand, within CA265_RS24695 at 6029.187 kb on - strand, within CA265_RS24695 at 6029.222 kb on + strand, within CA265_RS24695 at 6029.319 kb on + strand, within CA265_RS24695 at 6029.476 kb on + strand at 6029.477 kb on - strand at 6029.546 kb on - strand at 6029.546 kb on - strand at 6029.591 kb on - strand at 6029.634 kb on + strand at 6029.722 kb on + strand at 6029.739 kb on - strand at 6029.763 kb on + strand at 6029.805 kb on + strand at 6029.806 kb on - strand at 6029.828 kb on + strand at 6029.829 kb on - strand at 6029.889 kb on - strand at 6029.921 kb on - strand at 6029.921 kb on - strand at 6029.957 kb on - strand at 6029.996 kb on + strand at 6029.997 kb on - strand at 6030.012 kb on + strand at 6030.091 kb on - strand, within CA265_RS24700 at 6030.133 kb on - strand, within CA265_RS24700 at 6030.140 kb on + strand, within CA265_RS24700 at 6030.141 kb on - strand, within CA265_RS24700 at 6030.141 kb on - strand, within CA265_RS24700 at 6030.220 kb on + strand, within CA265_RS24700 at 6030.221 kb on - strand, within CA265_RS24700 at 6030.223 kb on - strand, within CA265_RS24700 at 6030.334 kb on + strand, within CA265_RS24700 at 6030.335 kb on - strand, within CA265_RS24700 at 6030.344 kb on - strand, within CA265_RS24700 at 6030.378 kb on + strand, within CA265_RS24700 at 6030.379 kb on - strand, within CA265_RS24700 at 6030.553 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 6,026,268 - CA265_RS24690 0.54 +0.1 6,026,294 + CA265_RS24690 0.56 -0.6 6,026,317 + CA265_RS24690 0.58 -2.0 6,026,460 + CA265_RS24690 0.67 +0.5 6,026,461 - CA265_RS24690 0.67 -0.7 6,026,461 - CA265_RS24690 0.67 +1.1 6,026,479 - CA265_RS24690 0.68 -1.9 6,026,504 - CA265_RS24690 0.69 +0.3 6,026,582 + CA265_RS24690 0.74 -0.2 6,026,649 + CA265_RS24690 0.79 +0.1 6,026,650 - CA265_RS24690 0.79 +0.2 6,026,710 - CA265_RS24690 0.82 -0.8 6,026,710 - CA265_RS24690 0.82 +0.7 6,026,710 - CA265_RS24690 0.82 +0.3 6,026,729 - CA265_RS24690 0.84 -0.0 6,026,729 - CA265_RS24690 0.84 +0.0 6,026,760 - CA265_RS24690 0.86 -0.8 6,026,760 - CA265_RS24690 0.86 +0.6 6,026,765 + CA265_RS24690 0.86 -0.8 6,026,832 - +0.9 6,026,837 - +0.1 6,026,837 - +0.5 6,026,837 - -0.0 6,026,919 + -0.5 6,026,922 - +0.4 6,026,971 + -1.3 6,026,982 - -0.4 6,027,050 + -0.2 6,027,059 + +0.4 6,027,065 - -0.4 6,027,098 + +0.0 6,027,106 + +1.3 6,027,107 - +2.0 6,027,107 - +0.3 6,027,220 + -0.9 6,027,253 + +0.2 6,027,254 - -0.4 6,027,275 + -0.7 6,027,350 + +0.7 6,027,364 + -0.3 6,027,504 + CA265_RS24695 0.10 -1.8 6,027,550 + CA265_RS24695 0.12 +0.9 6,027,550 + CA265_RS24695 0.12 -0.3 6,027,755 - CA265_RS24695 0.21 +1.1 6,027,782 + -0.2 6,027,782 + CA265_RS24695 0.22 -1.4 6,027,849 + CA265_RS24695 0.25 -0.2 6,027,861 - CA265_RS24695 0.25 +0.3 6,027,870 + CA265_RS24695 0.26 +0.3 6,027,870 + CA265_RS24695 0.26 -0.8 6,027,870 + CA265_RS24695 0.26 +0.5 6,027,871 - CA265_RS24695 0.26 +1.1 6,027,871 - CA265_RS24695 0.26 +0.2 6,027,871 - CA265_RS24695 0.26 +0.2 6,027,871 - CA265_RS24695 0.26 +0.7 6,027,871 - CA265_RS24695 0.26 +1.0 6,027,875 + CA265_RS24695 0.26 +0.6 6,027,926 - CA265_RS24695 0.28 -0.6 6,027,968 - CA265_RS24695 0.30 +1.1 6,028,016 - CA265_RS24695 0.32 +0.4 6,028,053 + CA265_RS24695 0.34 +0.3 6,028,053 + CA265_RS24695 0.34 +0.2 6,028,053 + CA265_RS24695 0.34 -1.2 6,028,054 - CA265_RS24695 0.34 +0.1 6,028,182 + CA265_RS24695 0.39 -0.3 6,028,213 - CA265_RS24695 0.41 -1.7 6,028,229 + CA265_RS24695 0.41 +0.7 6,028,238 - CA265_RS24695 0.42 -0.2 6,028,257 + CA265_RS24695 0.42 -0.3 6,028,271 + CA265_RS24695 0.43 +0.8 6,028,345 - CA265_RS24695 0.46 -0.7 6,028,345 - CA265_RS24695 0.46 -0.3 6,028,349 + CA265_RS24695 0.46 +0.6 6,028,349 + CA265_RS24695 0.46 -0.0 6,028,349 + CA265_RS24695 0.46 -0.5 6,028,350 - CA265_RS24695 0.46 -0.1 6,028,379 + CA265_RS24695 0.48 +3.1 6,028,386 - CA265_RS24695 0.48 +0.3 6,028,386 - CA265_RS24695 0.48 -0.3 6,028,415 + CA265_RS24695 0.49 +0.1 6,028,415 + CA265_RS24695 0.49 +1.1 6,028,473 + CA265_RS24695 0.52 -1.1 6,028,474 - CA265_RS24695 0.52 +0.4 6,028,527 + CA265_RS24695 0.54 +0.2 6,028,552 + CA265_RS24695 0.55 +0.5 6,028,589 + CA265_RS24695 0.57 +0.1 6,028,590 - CA265_RS24695 0.57 +0.4 6,028,590 - CA265_RS24695 0.57 -0.4 6,028,638 + CA265_RS24695 0.59 -0.7 6,028,683 - CA265_RS24695 0.61 -0.1 6,028,705 - CA265_RS24695 0.62 -2.4 6,028,705 - CA265_RS24695 0.62 +1.0 6,028,705 - CA265_RS24695 0.62 -0.4 6,028,729 - CA265_RS24695 0.63 -0.6 6,028,820 - CA265_RS24695 0.67 -1.2 6,028,822 + +0.8 6,028,823 - CA265_RS24695 0.67 +1.2 6,028,851 - CA265_RS24695 0.68 -0.2 6,028,943 + CA265_RS24695 0.72 -0.8 6,028,944 - CA265_RS24695 0.72 +0.7 6,028,952 - CA265_RS24695 0.72 +0.2 6,028,967 + CA265_RS24695 0.73 +0.6 6,029,009 + CA265_RS24695 0.75 -0.8 6,029,012 - CA265_RS24695 0.75 +0.5 6,029,046 - CA265_RS24695 0.76 -0.3 6,029,103 + CA265_RS24695 0.79 -1.3 6,029,115 + CA265_RS24695 0.79 -0.5 6,029,150 + CA265_RS24695 0.81 -0.0 6,029,154 + CA265_RS24695 0.81 +0.9 6,029,154 + CA265_RS24695 0.81 -0.2 6,029,170 - CA265_RS24695 0.82 -2.5 6,029,187 - CA265_RS24695 0.82 -0.5 6,029,222 + CA265_RS24695 0.84 +2.8 6,029,319 + CA265_RS24695 0.88 +0.2 6,029,476 + -1.6 6,029,477 - +0.2 6,029,546 - +0.9 6,029,546 - -0.4 6,029,591 - +0.2 6,029,634 + +0.5 6,029,722 + -1.3 6,029,739 - -0.7 6,029,763 + +0.5 6,029,805 + +0.2 6,029,806 - -0.3 6,029,828 + +0.4 6,029,829 - -0.2 6,029,889 - -0.3 6,029,921 - -0.8 6,029,921 - -0.6 6,029,957 - -0.1 6,029,996 + -0.5 6,029,997 - -0.2 6,030,012 + -0.0 6,030,091 - CA265_RS24700 0.16 +0.1 6,030,133 - CA265_RS24700 0.27 -1.4 6,030,140 + CA265_RS24700 0.29 -0.7 6,030,141 - CA265_RS24700 0.29 +2.1 6,030,141 - CA265_RS24700 0.29 +0.8 6,030,220 + CA265_RS24700 0.49 +0.8 6,030,221 - CA265_RS24700 0.49 +0.2 6,030,223 - CA265_RS24700 0.49 -1.4 6,030,334 + CA265_RS24700 0.77 +0.7 6,030,335 - CA265_RS24700 0.77 -0.1 6,030,344 - CA265_RS24700 0.79 +0.8 6,030,378 + CA265_RS24700 0.88 -0.7 6,030,379 - CA265_RS24700 0.88 -2.3 6,030,553 + +0.5
Or see this region's nucleotide sequence