Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22680 and CA265_RS22685 are separated by 52 nucleotides CA265_RS22685 and CA265_RS22690 are separated by 145 nucleotides CA265_RS22690 and CA265_RS22695 are separated by 21 nucleotides CA265_RS22695 and CA265_RS22700 are separated by 143 nucleotides
CA265_RS22680: CA265_RS22680 - A/G-specific adenine glycosylase, at 5,553,293 to 5,554,357
_RS22680
CA265_RS22685: CA265_RS22685 - single-stranded DNA-binding protein, at 5,554,410 to 5,554,847
_RS22685
CA265_RS22690: CA265_RS22690 - hypothetical protein, at 5,554,993 to 5,556,432
_RS22690
CA265_RS22695: CA265_RS22695 - starch synthase, at 5,556,454 to 5,557,284
_RS22695
CA265_RS22700: CA265_RS22700 - pantoate--beta-alanine ligase, at 5,557,428 to 5,558,273
_RS22700
Position (kb) 5554
5555
5556
5557 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5554.041 kb on + strand, within CA265_RS22680 at 5554.042 kb on - strand, within CA265_RS22680 at 5554.042 kb on - strand, within CA265_RS22680 at 5554.042 kb on - strand, within CA265_RS22680 at 5554.042 kb on - strand, within CA265_RS22680 at 5554.054 kb on - strand, within CA265_RS22680 at 5554.054 kb on - strand, within CA265_RS22680 at 5554.089 kb on - strand, within CA265_RS22680 at 5554.123 kb on - strand, within CA265_RS22680 at 5554.159 kb on + strand, within CA265_RS22680 at 5554.159 kb on + strand, within CA265_RS22680 at 5554.179 kb on + strand, within CA265_RS22680 at 5554.180 kb on - strand, within CA265_RS22680 at 5554.183 kb on - strand, within CA265_RS22680 at 5554.231 kb on - strand, within CA265_RS22680 at 5554.276 kb on + strand at 5554.282 kb on - strand at 5554.336 kb on + strand at 5554.344 kb on + strand at 5554.345 kb on - strand at 5554.345 kb on - strand at 5554.351 kb on + strand at 5554.351 kb on + strand at 5554.356 kb on - strand at 5554.356 kb on - strand at 5554.409 kb on + strand at 5554.431 kb on - strand at 5554.569 kb on - strand, within CA265_RS22685 at 5554.598 kb on - strand, within CA265_RS22685 at 5554.634 kb on + strand, within CA265_RS22685 at 5554.761 kb on - strand, within CA265_RS22685 at 5554.861 kb on + strand at 5554.862 kb on - strand at 5554.866 kb on - strand at 5554.870 kb on + strand at 5554.871 kb on - strand at 5554.871 kb on - strand at 5554.876 kb on - strand at 5554.998 kb on + strand at 5555.005 kb on - strand at 5555.020 kb on + strand at 5555.058 kb on + strand at 5555.058 kb on + strand at 5555.108 kb on + strand at 5555.109 kb on - strand at 5555.115 kb on + strand at 5555.115 kb on + strand at 5555.115 kb on + strand at 5555.116 kb on - strand at 5555.267 kb on + strand, within CA265_RS22690 at 5555.268 kb on - strand, within CA265_RS22690 at 5555.298 kb on + strand, within CA265_RS22690 at 5555.310 kb on - strand, within CA265_RS22690 at 5555.334 kb on + strand, within CA265_RS22690 at 5555.334 kb on + strand, within CA265_RS22690 at 5555.335 kb on - strand, within CA265_RS22690 at 5555.343 kb on - strand, within CA265_RS22690 at 5555.392 kb on - strand, within CA265_RS22690 at 5555.406 kb on - strand, within CA265_RS22690 at 5555.406 kb on - strand, within CA265_RS22690 at 5555.471 kb on - strand, within CA265_RS22690 at 5555.475 kb on - strand, within CA265_RS22690 at 5555.479 kb on + strand, within CA265_RS22690 at 5555.484 kb on + strand, within CA265_RS22690 at 5555.485 kb on - strand, within CA265_RS22690 at 5555.485 kb on - strand, within CA265_RS22690 at 5555.485 kb on - strand, within CA265_RS22690 at 5555.486 kb on + strand, within CA265_RS22690 at 5555.504 kb on - strand, within CA265_RS22690 at 5555.549 kb on + strand, within CA265_RS22690 at 5555.585 kb on - strand, within CA265_RS22690 at 5555.635 kb on + strand, within CA265_RS22690 at 5555.693 kb on + strand, within CA265_RS22690 at 5555.743 kb on - strand, within CA265_RS22690 at 5555.768 kb on + strand, within CA265_RS22690 at 5555.768 kb on + strand, within CA265_RS22690 at 5555.769 kb on - strand, within CA265_RS22690 at 5555.820 kb on + strand, within CA265_RS22690 at 5555.848 kb on - strand, within CA265_RS22690 at 5555.885 kb on - strand, within CA265_RS22690 at 5555.898 kb on + strand, within CA265_RS22690 at 5555.920 kb on - strand, within CA265_RS22690 at 5555.961 kb on + strand, within CA265_RS22690 at 5555.962 kb on - strand, within CA265_RS22690 at 5555.968 kb on - strand, within CA265_RS22690 at 5555.971 kb on + strand, within CA265_RS22690 at 5555.972 kb on - strand, within CA265_RS22690 at 5555.980 kb on - strand, within CA265_RS22690 at 5555.996 kb on - strand, within CA265_RS22690 at 5556.054 kb on - strand, within CA265_RS22690 at 5556.102 kb on + strand, within CA265_RS22690 at 5556.133 kb on + strand, within CA265_RS22690 at 5556.134 kb on - strand, within CA265_RS22690 at 5556.224 kb on - strand, within CA265_RS22690 at 5556.224 kb on - strand, within CA265_RS22690 at 5556.228 kb on + strand, within CA265_RS22690 at 5556.228 kb on + strand, within CA265_RS22690 at 5556.231 kb on - strand, within CA265_RS22690 at 5556.331 kb on - strand at 5556.410 kb on - strand at 5556.410 kb on - strand at 5556.410 kb on - strand at 5556.447 kb on + strand at 5556.455 kb on + strand at 5557.389 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 5,554,041 + CA265_RS22680 0.70 +0.3 5,554,042 - CA265_RS22680 0.70 +1.0 5,554,042 - CA265_RS22680 0.70 -0.8 5,554,042 - CA265_RS22680 0.70 -1.6 5,554,042 - CA265_RS22680 0.70 -0.3 5,554,054 - CA265_RS22680 0.71 -0.9 5,554,054 - CA265_RS22680 0.71 -0.6 5,554,089 - CA265_RS22680 0.75 -1.4 5,554,123 - CA265_RS22680 0.78 +0.3 5,554,159 + CA265_RS22680 0.81 +1.0 5,554,159 + CA265_RS22680 0.81 +0.5 5,554,179 + CA265_RS22680 0.83 +0.3 5,554,180 - CA265_RS22680 0.83 -0.8 5,554,183 - CA265_RS22680 0.84 +0.6 5,554,231 - CA265_RS22680 0.88 -0.4 5,554,276 + +0.4 5,554,282 - -0.2 5,554,336 + +0.1 5,554,344 + +1.1 5,554,345 - +0.8 5,554,345 - -0.2 5,554,351 + -0.6 5,554,351 + +0.9 5,554,356 - -1.2 5,554,356 - -0.1 5,554,409 + +0.1 5,554,431 - +1.6 5,554,569 - CA265_RS22685 0.36 -0.1 5,554,598 - CA265_RS22685 0.43 +1.6 5,554,634 + CA265_RS22685 0.51 -0.9 5,554,761 - CA265_RS22685 0.80 +0.2 5,554,861 + +0.1 5,554,862 - +0.7 5,554,866 - +0.0 5,554,870 + +0.4 5,554,871 - +0.3 5,554,871 - +0.3 5,554,876 - -1.8 5,554,998 + +1.4 5,555,005 - +0.6 5,555,020 + +0.9 5,555,058 + -0.4 5,555,058 + +0.6 5,555,108 + -0.2 5,555,109 - -1.4 5,555,115 + +0.6 5,555,115 + -0.3 5,555,115 + +1.5 5,555,116 - -0.2 5,555,267 + CA265_RS22690 0.19 +0.6 5,555,268 - CA265_RS22690 0.19 +0.9 5,555,298 + CA265_RS22690 0.21 -0.5 5,555,310 - CA265_RS22690 0.22 +1.3 5,555,334 + CA265_RS22690 0.24 +1.0 5,555,334 + CA265_RS22690 0.24 +1.1 5,555,335 - CA265_RS22690 0.24 +0.8 5,555,343 - CA265_RS22690 0.24 +0.3 5,555,392 - CA265_RS22690 0.28 -0.4 5,555,406 - CA265_RS22690 0.29 +1.1 5,555,406 - CA265_RS22690 0.29 -0.1 5,555,471 - CA265_RS22690 0.33 +1.4 5,555,475 - CA265_RS22690 0.33 +0.3 5,555,479 + CA265_RS22690 0.34 +0.1 5,555,484 + CA265_RS22690 0.34 +0.7 5,555,485 - CA265_RS22690 0.34 +0.1 5,555,485 - CA265_RS22690 0.34 +0.6 5,555,485 - CA265_RS22690 0.34 +0.4 5,555,486 + CA265_RS22690 0.34 +0.7 5,555,504 - CA265_RS22690 0.35 -0.1 5,555,549 + CA265_RS22690 0.39 +0.5 5,555,585 - CA265_RS22690 0.41 +1.1 5,555,635 + CA265_RS22690 0.45 -0.2 5,555,693 + CA265_RS22690 0.49 +0.3 5,555,743 - CA265_RS22690 0.52 +0.4 5,555,768 + CA265_RS22690 0.54 +0.3 5,555,768 + CA265_RS22690 0.54 +1.1 5,555,769 - CA265_RS22690 0.54 +1.4 5,555,820 + CA265_RS22690 0.57 +1.4 5,555,848 - CA265_RS22690 0.59 -0.2 5,555,885 - CA265_RS22690 0.62 -0.7 5,555,898 + CA265_RS22690 0.63 +1.9 5,555,920 - CA265_RS22690 0.64 +1.5 5,555,961 + CA265_RS22690 0.67 -1.6 5,555,962 - CA265_RS22690 0.67 +0.6 5,555,968 - CA265_RS22690 0.68 +0.0 5,555,971 + CA265_RS22690 0.68 +1.4 5,555,972 - CA265_RS22690 0.68 +0.9 5,555,980 - CA265_RS22690 0.69 +0.9 5,555,996 - CA265_RS22690 0.70 +0.0 5,556,054 - CA265_RS22690 0.74 +1.1 5,556,102 + CA265_RS22690 0.77 -1.1 5,556,133 + CA265_RS22690 0.79 +0.3 5,556,134 - CA265_RS22690 0.79 -0.0 5,556,224 - CA265_RS22690 0.85 +1.9 5,556,224 - CA265_RS22690 0.85 +1.2 5,556,228 + CA265_RS22690 0.86 +1.0 5,556,228 + CA265_RS22690 0.86 +1.4 5,556,231 - CA265_RS22690 0.86 +0.6 5,556,331 - +1.2 5,556,410 - +0.7 5,556,410 - +0.3 5,556,410 - +0.2 5,556,447 + +2.2 5,556,455 + +1.7 5,557,389 + -0.8
Or see this region's nucleotide sequence