Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21920

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21915 and CA265_RS21920 are separated by 36 nucleotidesCA265_RS21920 and CA265_RS21925 are separated by 618 nucleotides CA265_RS21915: CA265_RS21915 - LacI family transcriptional regulator, at 5,384,848 to 5,385,870 _RS21915 CA265_RS21920: CA265_RS21920 - DUF5009 domain-containing protein, at 5,385,907 to 5,387,067 _RS21920 CA265_RS21925: CA265_RS21925 - Glucosamine-6-phosphate deaminase (EC 3.5.99.6) (from data), at 5,387,686 to 5,389,611 _RS21925 Position (kb) 5385 5386 5387 5388Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5384.958 kb on + strand, within CA265_RS21915at 5385.009 kb on + strand, within CA265_RS21915at 5385.010 kb on - strand, within CA265_RS21915at 5385.010 kb on - strand, within CA265_RS21915at 5385.016 kb on - strand, within CA265_RS21915at 5385.087 kb on + strand, within CA265_RS21915at 5385.133 kb on - strand, within CA265_RS21915at 5385.136 kb on - strand, within CA265_RS21915at 5385.213 kb on + strand, within CA265_RS21915at 5385.214 kb on - strand, within CA265_RS21915at 5385.217 kb on - strand, within CA265_RS21915at 5385.227 kb on - strand, within CA265_RS21915at 5385.230 kb on - strand, within CA265_RS21915at 5385.271 kb on + strand, within CA265_RS21915at 5385.283 kb on - strand, within CA265_RS21915at 5385.286 kb on + strand, within CA265_RS21915at 5385.291 kb on + strand, within CA265_RS21915at 5385.361 kb on - strand, within CA265_RS21915at 5385.409 kb on + strand, within CA265_RS21915at 5385.430 kb on + strand, within CA265_RS21915at 5385.431 kb on - strand, within CA265_RS21915at 5385.431 kb on - strand, within CA265_RS21915at 5385.431 kb on - strand, within CA265_RS21915at 5385.432 kb on + strand, within CA265_RS21915at 5385.432 kb on + strand, within CA265_RS21915at 5385.454 kb on - strand, within CA265_RS21915at 5385.515 kb on - strand, within CA265_RS21915at 5385.538 kb on + strand, within CA265_RS21915at 5385.539 kb on - strand, within CA265_RS21915at 5385.547 kb on + strand, within CA265_RS21915at 5385.548 kb on - strand, within CA265_RS21915at 5385.579 kb on - strand, within CA265_RS21915at 5385.582 kb on + strand, within CA265_RS21915at 5385.622 kb on - strand, within CA265_RS21915at 5385.633 kb on + strand, within CA265_RS21915at 5385.634 kb on - strand, within CA265_RS21915at 5385.634 kb on - strand, within CA265_RS21915at 5385.634 kb on - strand, within CA265_RS21915at 5385.655 kb on + strand, within CA265_RS21915at 5385.656 kb on - strand, within CA265_RS21915at 5385.671 kb on - strand, within CA265_RS21915at 5385.671 kb on - strand, within CA265_RS21915at 5385.671 kb on - strand, within CA265_RS21915at 5385.718 kb on - strand, within CA265_RS21915at 5385.795 kb on + strandat 5385.818 kb on - strandat 5385.826 kb on - strandat 5385.841 kb on + strandat 5385.848 kb on + strandat 5385.849 kb on - strandat 5385.851 kb on - strandat 5385.971 kb on + strandat 5386.001 kb on - strandat 5386.009 kb on - strandat 5386.020 kb on + strandat 5386.022 kb on + strandat 5386.048 kb on + strand, within CA265_RS21920at 5386.048 kb on + strand, within CA265_RS21920at 5386.141 kb on + strand, within CA265_RS21920at 5386.241 kb on + strand, within CA265_RS21920at 5386.242 kb on - strand, within CA265_RS21920at 5386.246 kb on + strand, within CA265_RS21920at 5386.247 kb on - strand, within CA265_RS21920at 5386.247 kb on - strand, within CA265_RS21920at 5386.250 kb on + strand, within CA265_RS21920at 5386.250 kb on + strand, within CA265_RS21920at 5386.250 kb on + strand, within CA265_RS21920at 5386.251 kb on - strand, within CA265_RS21920at 5386.350 kb on + strand, within CA265_RS21920at 5386.363 kb on + strand, within CA265_RS21920at 5386.406 kb on - strand, within CA265_RS21920at 5386.406 kb on - strand, within CA265_RS21920at 5386.406 kb on - strand, within CA265_RS21920at 5386.426 kb on + strand, within CA265_RS21920at 5386.427 kb on - strand, within CA265_RS21920at 5386.431 kb on + strand, within CA265_RS21920at 5386.432 kb on - strand, within CA265_RS21920at 5386.476 kb on + strand, within CA265_RS21920at 5386.576 kb on + strand, within CA265_RS21920at 5386.601 kb on - strand, within CA265_RS21920at 5386.634 kb on - strand, within CA265_RS21920at 5386.651 kb on - strand, within CA265_RS21920at 5386.725 kb on + strand, within CA265_RS21920at 5386.725 kb on + strand, within CA265_RS21920at 5386.790 kb on + strand, within CA265_RS21920at 5386.795 kb on + strand, within CA265_RS21920at 5386.797 kb on + strand, within CA265_RS21920at 5386.798 kb on - strand, within CA265_RS21920at 5386.819 kb on + strand, within CA265_RS21920at 5386.819 kb on + strand, within CA265_RS21920at 5386.883 kb on - strand, within CA265_RS21920at 5386.929 kb on + strand, within CA265_RS21920at 5386.929 kb on + strand, within CA265_RS21920at 5386.964 kb on + strandat 5386.964 kb on + strandat 5386.965 kb on - strandat 5386.997 kb on - strandat 5387.042 kb on - strandat 5387.055 kb on + strandat 5387.096 kb on - strandat 5387.202 kb on + strandat 5387.420 kb on - strandat 5387.449 kb on + strandat 5387.481 kb on - strandat 5387.524 kb on + strandat 5387.526 kb on + strandat 5387.526 kb on + strandat 5387.545 kb on - strandat 5387.563 kb on + strandat 5387.707 kb on + strandat 5387.754 kb on - strandat 5387.754 kb on - strandat 5387.948 kb on + strand, within CA265_RS21925at 5387.948 kb on + strand, within CA265_RS21925at 5387.949 kb on - strand, within CA265_RS21925at 5387.949 kb on - strand, within CA265_RS21925at 5388.034 kb on - strand, within CA265_RS21925

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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5,384,958 + CA265_RS21915 0.11 +1.3
5,385,009 + CA265_RS21915 0.16 -0.7
5,385,010 - CA265_RS21915 0.16 +0.7
5,385,010 - CA265_RS21915 0.16 +0.2
5,385,016 - CA265_RS21915 0.16 +0.3
5,385,087 + CA265_RS21915 0.23 +0.2
5,385,133 - CA265_RS21915 0.28 +0.2
5,385,136 - CA265_RS21915 0.28 +1.0
5,385,213 + CA265_RS21915 0.36 -0.1
5,385,214 - CA265_RS21915 0.36 +0.0
5,385,217 - CA265_RS21915 0.36 -0.0
5,385,227 - CA265_RS21915 0.37 +0.1
5,385,230 - CA265_RS21915 0.37 -0.0
5,385,271 + CA265_RS21915 0.41 +0.2
5,385,283 - CA265_RS21915 0.43 +1.5
5,385,286 + CA265_RS21915 0.43 +2.1
5,385,291 + CA265_RS21915 0.43 -0.1
5,385,361 - CA265_RS21915 0.50 +0.1
5,385,409 + CA265_RS21915 0.55 +0.1
5,385,430 + CA265_RS21915 0.57 +0.6
5,385,431 - CA265_RS21915 0.57 -0.3
5,385,431 - CA265_RS21915 0.57 +1.7
5,385,431 - CA265_RS21915 0.57 +0.7
5,385,432 + CA265_RS21915 0.57 +2.0
5,385,432 + CA265_RS21915 0.57 +0.1
5,385,454 - CA265_RS21915 0.59 +1.0
5,385,515 - CA265_RS21915 0.65 -1.3
5,385,538 + CA265_RS21915 0.67 +0.3
5,385,539 - CA265_RS21915 0.68 +0.3
5,385,547 + CA265_RS21915 0.68 +0.4
5,385,548 - CA265_RS21915 0.68 +1.0
5,385,579 - CA265_RS21915 0.71 -1.0
5,385,582 + CA265_RS21915 0.72 +0.6
5,385,622 - CA265_RS21915 0.76 -0.3
5,385,633 + CA265_RS21915 0.77 -0.2
5,385,634 - CA265_RS21915 0.77 +0.4
5,385,634 - CA265_RS21915 0.77 +0.4
5,385,634 - CA265_RS21915 0.77 +1.3
5,385,655 + CA265_RS21915 0.79 +0.2
5,385,656 - CA265_RS21915 0.79 -0.2
5,385,671 - CA265_RS21915 0.80 +0.2
5,385,671 - CA265_RS21915 0.80 +0.5
5,385,671 - CA265_RS21915 0.80 +0.7
5,385,718 - CA265_RS21915 0.85 +1.2
5,385,795 + +0.2
5,385,818 - +1.4
5,385,826 - +0.6
5,385,841 + +0.2
5,385,848 + +0.4
5,385,849 - +0.2
5,385,851 - -0.3
5,385,971 + +0.4
5,386,001 - -0.9
5,386,009 - -3.7
5,386,020 + -0.4
5,386,022 + +0.1
5,386,048 + CA265_RS21920 0.12 +0.2
5,386,048 + CA265_RS21920 0.12 -1.6
5,386,141 + CA265_RS21920 0.20 -2.3
5,386,241 + CA265_RS21920 0.29 -0.9
5,386,242 - CA265_RS21920 0.29 +0.1
5,386,246 + CA265_RS21920 0.29 -1.0
5,386,247 - CA265_RS21920 0.29 -1.2
5,386,247 - CA265_RS21920 0.29 -1.9
5,386,250 + CA265_RS21920 0.30 -0.6
5,386,250 + CA265_RS21920 0.30 -0.7
5,386,250 + CA265_RS21920 0.30 -0.0
5,386,251 - CA265_RS21920 0.30 -0.3
5,386,350 + CA265_RS21920 0.38 +0.2
5,386,363 + CA265_RS21920 0.39 +0.7
5,386,406 - CA265_RS21920 0.43 -0.1
5,386,406 - CA265_RS21920 0.43 +1.1
5,386,406 - CA265_RS21920 0.43 -0.8
5,386,426 + CA265_RS21920 0.45 -0.3
5,386,427 - CA265_RS21920 0.45 -2.1
5,386,431 + CA265_RS21920 0.45 +1.8
5,386,432 - CA265_RS21920 0.45 +1.1
5,386,476 + CA265_RS21920 0.49 -0.9
5,386,576 + CA265_RS21920 0.58 -0.2
5,386,601 - CA265_RS21920 0.60 -0.2
5,386,634 - CA265_RS21920 0.63 -0.1
5,386,651 - CA265_RS21920 0.64 +0.2
5,386,725 + CA265_RS21920 0.70 +1.1
5,386,725 + CA265_RS21920 0.70 +0.3
5,386,790 + CA265_RS21920 0.76 -2.1
5,386,795 + CA265_RS21920 0.76 -1.7
5,386,797 + CA265_RS21920 0.77 -0.2
5,386,798 - CA265_RS21920 0.77 -0.0
5,386,819 + CA265_RS21920 0.79 +0.6
5,386,819 + CA265_RS21920 0.79 +0.7
5,386,883 - CA265_RS21920 0.84 -0.2
5,386,929 + CA265_RS21920 0.88 +0.6
5,386,929 + CA265_RS21920 0.88 -0.1
5,386,964 + +0.1
5,386,964 + -1.2
5,386,965 - -0.2
5,386,997 - +0.6
5,387,042 - +0.2
5,387,055 + +0.0
5,387,096 - -1.5
5,387,202 + -0.7
5,387,420 - -0.1
5,387,449 + -0.3
5,387,481 - -1.3
5,387,524 + -0.1
5,387,526 + -0.4
5,387,526 + -2.0
5,387,545 - -0.5
5,387,563 + -1.2
5,387,707 + +0.3
5,387,754 - -1.2
5,387,754 - -0.0
5,387,948 + CA265_RS21925 0.14 +0.4
5,387,948 + CA265_RS21925 0.14 -1.3
5,387,949 - CA265_RS21925 0.14 +0.2
5,387,949 - CA265_RS21925 0.14 -1.3
5,388,034 - CA265_RS21925 0.18 -0.8

Or see this region's nucleotide sequence