Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21680 and CA265_RS21685 are separated by 37 nucleotides CA265_RS21685 and CA265_RS21690 are separated by 75 nucleotides CA265_RS21690 and CA265_RS21695 are separated by 14 nucleotides CA265_RS21695 and CA265_RS21700 are separated by 470 nucleotides
CA265_RS21680: CA265_RS21680 - sigma-54-dependent Fis family transcriptional regulator, at 5,333,689 to 5,334,936
_RS21680
CA265_RS21685: CA265_RS21685 - hypothetical protein, at 5,334,974 to 5,335,486
_RS21685
CA265_RS21690: CA265_RS21690 - hypothetical protein, at 5,335,562 to 5,336,620
_RS21690
CA265_RS21695: CA265_RS21695 - preprotein translocase subunit SecG, at 5,336,635 to 5,336,997
_RS21695
CA265_RS21700: CA265_RS21700 - two-component sensor histidine kinase, at 5,337,468 to 5,338,493
_RS21700
Position (kb) 5335
5336
5337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5334.955 kb on + strand at 5334.965 kb on + strand at 5335.489 kb on - strand at 5335.627 kb on - strand at 5335.680 kb on + strand, within CA265_RS21690 at 5335.680 kb on + strand, within CA265_RS21690 at 5335.759 kb on - strand, within CA265_RS21690 at 5335.759 kb on - strand, within CA265_RS21690 at 5335.828 kb on + strand, within CA265_RS21690 at 5335.860 kb on + strand, within CA265_RS21690 at 5335.871 kb on - strand, within CA265_RS21690 at 5335.879 kb on + strand, within CA265_RS21690 at 5335.992 kb on + strand, within CA265_RS21690 at 5335.992 kb on + strand, within CA265_RS21690 at 5336.131 kb on + strand, within CA265_RS21690 at 5336.131 kb on + strand, within CA265_RS21690 at 5336.153 kb on - strand, within CA265_RS21690 at 5336.201 kb on - strand, within CA265_RS21690 at 5336.209 kb on + strand, within CA265_RS21690 at 5336.214 kb on + strand, within CA265_RS21690 at 5336.271 kb on - strand, within CA265_RS21690 at 5336.427 kb on + strand, within CA265_RS21690 at 5336.469 kb on - strand, within CA265_RS21690 at 5336.536 kb on + strand at 5336.537 kb on - strand at 5336.537 kb on - strand at 5336.540 kb on + strand at 5336.995 kb on + strand at 5337.002 kb on + strand at 5337.002 kb on + strand at 5337.003 kb on - strand at 5337.017 kb on + strand at 5337.092 kb on + strand at 5337.092 kb on + strand at 5337.092 kb on + strand at 5337.128 kb on - strand at 5337.132 kb on + strand at 5337.174 kb on + strand at 5337.175 kb on - strand at 5337.175 kb on - strand at 5337.245 kb on + strand at 5337.290 kb on + strand at 5337.290 kb on + strand at 5337.339 kb on + strand at 5337.371 kb on - strand at 5337.371 kb on - strand at 5337.375 kb on + strand at 5337.376 kb on - strand at 5337.406 kb on - strand at 5337.448 kb on - strand at 5337.457 kb on + strand at 5337.555 kb on + strand at 5337.558 kb on + strand at 5337.558 kb on + strand at 5337.558 kb on + strand at 5337.558 kb on + strand at 5337.581 kb on - strand, within CA265_RS21700 at 5337.609 kb on + strand, within CA265_RS21700 at 5337.612 kb on + strand, within CA265_RS21700
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 5,334,955 + -2.8 5,334,965 + +0.0 5,335,489 - +0.8 5,335,627 - -2.8 5,335,680 + CA265_RS21690 0.11 -0.7 5,335,680 + CA265_RS21690 0.11 -1.9 5,335,759 - CA265_RS21690 0.19 -2.8 5,335,759 - CA265_RS21690 0.19 +0.5 5,335,828 + CA265_RS21690 0.25 -0.0 5,335,860 + CA265_RS21690 0.28 -1.5 5,335,871 - CA265_RS21690 0.29 -0.6 5,335,879 + CA265_RS21690 0.30 -0.6 5,335,992 + CA265_RS21690 0.41 -1.7 5,335,992 + CA265_RS21690 0.41 -1.9 5,336,131 + CA265_RS21690 0.54 -1.5 5,336,131 + CA265_RS21690 0.54 -0.8 5,336,153 - CA265_RS21690 0.56 -1.8 5,336,201 - CA265_RS21690 0.60 +0.3 5,336,209 + CA265_RS21690 0.61 -0.6 5,336,214 + CA265_RS21690 0.62 +0.1 5,336,271 - CA265_RS21690 0.67 +3.0 5,336,427 + CA265_RS21690 0.82 -1.8 5,336,469 - CA265_RS21690 0.86 +0.8 5,336,536 + -1.8 5,336,537 - -0.2 5,336,537 - -0.8 5,336,540 + +0.7 5,336,995 + +0.1 5,337,002 + -0.3 5,337,002 + -2.0 5,337,003 - +0.4 5,337,017 + -0.2 5,337,092 + -0.2 5,337,092 + +0.4 5,337,092 + -0.1 5,337,128 - +1.0 5,337,132 + -0.5 5,337,174 + -0.6 5,337,175 - +0.8 5,337,175 - +0.9 5,337,245 + +0.5 5,337,290 + -0.8 5,337,290 + -0.6 5,337,339 + +0.7 5,337,371 - -1.2 5,337,371 - -0.8 5,337,375 + +1.2 5,337,376 - -0.7 5,337,406 - -0.6 5,337,448 - +1.1 5,337,457 + -1.5 5,337,555 + -0.7 5,337,558 + +0.1 5,337,558 + -1.8 5,337,558 + +0.7 5,337,558 + -0.3 5,337,581 - CA265_RS21700 0.11 -1.3 5,337,609 + CA265_RS21700 0.14 -0.2 5,337,612 + CA265_RS21700 0.14 -0.5
Or see this region's nucleotide sequence