Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20845 and CA265_RS20850 are separated by 176 nucleotides CA265_RS20850 and CA265_RS20855 are separated by 48 nucleotides
CA265_RS20845: CA265_RS20845 - MBL fold hydrolase, at 5,140,833 to 5,142,215
_RS20845
CA265_RS20850: CA265_RS20850 - glutamate-5-semialdehyde dehydrogenase, at 5,142,392 to 5,143,639
_RS20850
CA265_RS20855: CA265_RS20855 - glutamate 5-kinase (EC 2.7.2.11) (from data) , at 5,143,688 to 5,144,767
_RS20855
Position (kb)
5142
5143
5144 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 5141.403 kb on + strand, within CA265_RS20845 at 5141.445 kb on + strand, within CA265_RS20845 at 5141.454 kb on - strand, within CA265_RS20845 at 5141.501 kb on - strand, within CA265_RS20845 at 5141.632 kb on + strand, within CA265_RS20845 at 5141.636 kb on - strand, within CA265_RS20845 at 5141.657 kb on - strand, within CA265_RS20845 at 5141.713 kb on + strand, within CA265_RS20845 at 5141.778 kb on + strand, within CA265_RS20845 at 5141.778 kb on + strand, within CA265_RS20845 at 5141.802 kb on - strand, within CA265_RS20845 at 5141.835 kb on - strand, within CA265_RS20845 at 5141.837 kb on + strand, within CA265_RS20845 at 5141.904 kb on + strand, within CA265_RS20845 at 5141.913 kb on - strand, within CA265_RS20845 at 5141.957 kb on + strand, within CA265_RS20845 at 5141.958 kb on - strand, within CA265_RS20845 at 5141.958 kb on - strand, within CA265_RS20845 at 5141.958 kb on - strand, within CA265_RS20845 at 5141.958 kb on - strand, within CA265_RS20845 at 5141.962 kb on + strand, within CA265_RS20845 at 5141.963 kb on - strand, within CA265_RS20845 at 5142.013 kb on - strand, within CA265_RS20845 at 5142.022 kb on + strand, within CA265_RS20845 at 5142.023 kb on - strand, within CA265_RS20845 at 5142.041 kb on + strand, within CA265_RS20845 at 5142.042 kb on - strand, within CA265_RS20845 at 5142.098 kb on + strand at 5142.128 kb on + strand at 5142.158 kb on - strand at 5142.174 kb on - strand at 5142.178 kb on + strand at 5142.178 kb on + strand at 5142.179 kb on - strand at 5142.179 kb on - strand at 5142.213 kb on + strand at 5142.213 kb on + strand at 5142.214 kb on - strand at 5142.257 kb on + strand at 5142.257 kb on + strand at 5142.298 kb on - strand at 5142.336 kb on - strand at 5142.379 kb on - strand at 5142.430 kb on + strand at 5142.431 kb on - strand at 5142.485 kb on - strand at 5142.487 kb on + strand at 5142.487 kb on + strand at 5142.487 kb on + strand at 5142.488 kb on - strand at 5142.529 kb on + strand, within CA265_RS20850 at 5142.553 kb on - strand, within CA265_RS20850 at 5142.570 kb on - strand, within CA265_RS20850 at 5142.579 kb on - strand, within CA265_RS20850 at 5142.631 kb on + strand, within CA265_RS20850 at 5142.637 kb on + strand, within CA265_RS20850 at 5142.638 kb on - strand, within CA265_RS20850 at 5142.638 kb on - strand, within CA265_RS20850 at 5142.715 kb on + strand, within CA265_RS20850 at 5142.806 kb on + strand, within CA265_RS20850 at 5142.899 kb on + strand, within CA265_RS20850 at 5142.899 kb on + strand, within CA265_RS20850 at 5142.900 kb on - strand, within CA265_RS20850 at 5142.925 kb on + strand, within CA265_RS20850 at 5142.966 kb on + strand, within CA265_RS20850 at 5142.966 kb on + strand, within CA265_RS20850 at 5142.967 kb on - strand, within CA265_RS20850 at 5142.970 kb on + strand, within CA265_RS20850 at 5143.027 kb on - strand, within CA265_RS20850 at 5143.031 kb on - strand, within CA265_RS20850 at 5143.059 kb on - strand, within CA265_RS20850 at 5143.086 kb on - strand, within CA265_RS20850 at 5143.089 kb on - strand, within CA265_RS20850 at 5143.119 kb on - strand, within CA265_RS20850 at 5143.173 kb on - strand, within CA265_RS20850 at 5143.291 kb on - strand, within CA265_RS20850 at 5143.316 kb on + strand, within CA265_RS20850 at 5143.316 kb on + strand, within CA265_RS20850 at 5143.317 kb on - strand, within CA265_RS20850 at 5143.323 kb on - strand, within CA265_RS20850 at 5143.331 kb on + strand, within CA265_RS20850 at 5143.334 kb on - strand, within CA265_RS20850 at 5143.334 kb on - strand, within CA265_RS20850 at 5143.427 kb on + strand, within CA265_RS20850 at 5143.428 kb on - strand, within CA265_RS20850 at 5143.428 kb on - strand, within CA265_RS20850 at 5143.430 kb on - strand at 5143.430 kb on - strand at 5143.430 kb on - strand, within CA265_RS20850 at 5143.438 kb on + strand, within CA265_RS20850 at 5143.438 kb on + strand, within CA265_RS20850 at 5143.439 kb on - strand, within CA265_RS20850 at 5143.443 kb on - strand, within CA265_RS20850 at 5143.483 kb on + strand, within CA265_RS20850 at 5143.522 kb on + strand at 5143.523 kb on - strand at 5143.586 kb on - strand at 5143.589 kb on + strand at 5143.589 kb on + strand at 5143.590 kb on - strand at 5143.590 kb on - strand at 5143.624 kb on - strand at 5143.624 kb on - strand at 5143.624 kb on - strand at 5143.630 kb on + strand at 5143.630 kb on + strand at 5143.687 kb on - strand at 5143.694 kb on - strand at 5143.713 kb on + strand at 5143.773 kb on + strand at 5143.825 kb on + strand, within CA265_RS20855 at 5143.877 kb on + strand, within CA265_RS20855 at 5143.904 kb on + strand, within CA265_RS20855 at 5144.011 kb on + strand, within CA265_RS20855 at 5144.011 kb on + strand, within CA265_RS20855 at 5144.012 kb on - strand, within CA265_RS20855 at 5144.031 kb on - strand, within CA265_RS20855 at 5144.123 kb on - strand, within CA265_RS20855 at 5144.179 kb on + strand, within CA265_RS20855 at 5144.242 kb on - strand, within CA265_RS20855 at 5144.242 kb on - strand, within CA265_RS20855 at 5144.242 kb on - strand, within CA265_RS20855 at 5144.242 kb on - strand, within CA265_RS20855 at 5144.378 kb on + strand, within CA265_RS20855 at 5144.505 kb on + strand, within CA265_RS20855 at 5144.509 kb on + strand, within CA265_RS20855 at 5144.510 kb on - strand, within CA265_RS20855
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 5,141,403 + CA265_RS20845 0.41 +0.2 5,141,445 + CA265_RS20845 0.44 +1.1 5,141,454 - CA265_RS20845 0.45 -1.7 5,141,501 - CA265_RS20845 0.48 +0.2 5,141,632 + CA265_RS20845 0.58 +0.1 5,141,636 - CA265_RS20845 0.58 +0.6 5,141,657 - CA265_RS20845 0.60 -0.2 5,141,713 + CA265_RS20845 0.64 +0.2 5,141,778 + CA265_RS20845 0.68 +0.1 5,141,778 + CA265_RS20845 0.68 -1.3 5,141,802 - CA265_RS20845 0.70 +0.8 5,141,835 - CA265_RS20845 0.72 -0.7 5,141,837 + CA265_RS20845 0.73 +0.1 5,141,904 + CA265_RS20845 0.77 -0.0 5,141,913 - CA265_RS20845 0.78 +0.4 5,141,957 + CA265_RS20845 0.81 -0.1 5,141,958 - CA265_RS20845 0.81 -1.6 5,141,958 - CA265_RS20845 0.81 +0.5 5,141,958 - CA265_RS20845 0.81 -1.9 5,141,958 - CA265_RS20845 0.81 +1.2 5,141,962 + CA265_RS20845 0.82 -1.2 5,141,963 - CA265_RS20845 0.82 -1.6 5,142,013 - CA265_RS20845 0.85 +0.2 5,142,022 + CA265_RS20845 0.86 -1.8 5,142,023 - CA265_RS20845 0.86 +0.0 5,142,041 + CA265_RS20845 0.87 +0.7 5,142,042 - CA265_RS20845 0.87 +0.4 5,142,098 + -0.1 5,142,128 + -0.2 5,142,158 - -0.8 5,142,174 - +0.2 5,142,178 + -2.3 5,142,178 + -0.5 5,142,179 - +0.9 5,142,179 - -0.0 5,142,213 + +0.3 5,142,213 + +0.1 5,142,214 - +0.2 5,142,257 + +0.0 5,142,257 + -0.8 5,142,298 - +0.2 5,142,336 - +0.1 5,142,379 - -0.9 5,142,430 + -2.8 5,142,431 - -3.4 5,142,485 - -2.4 5,142,487 + -5.5 5,142,487 + -3.4 5,142,487 + -2.1 5,142,488 - -2.6 5,142,529 + CA265_RS20850 0.11 -3.4 5,142,553 - CA265_RS20850 0.13 -4.6 5,142,570 - CA265_RS20850 0.14 -1.2 5,142,579 - CA265_RS20850 0.15 -1.9 5,142,631 + CA265_RS20850 0.19 -3.4 5,142,637 + CA265_RS20850 0.20 -2.2 5,142,638 - CA265_RS20850 0.20 -1.6 5,142,638 - CA265_RS20850 0.20 -3.9 5,142,715 + CA265_RS20850 0.26 -3.4 5,142,806 + CA265_RS20850 0.33 -3.1 5,142,899 + CA265_RS20850 0.41 -5.4 5,142,899 + CA265_RS20850 0.41 -2.3 5,142,900 - CA265_RS20850 0.41 -2.9 5,142,925 + CA265_RS20850 0.43 -3.2 5,142,966 + CA265_RS20850 0.46 -2.9 5,142,966 + CA265_RS20850 0.46 -0.0 5,142,967 - CA265_RS20850 0.46 -3.7 5,142,970 + CA265_RS20850 0.46 -2.8 5,143,027 - CA265_RS20850 0.51 -1.9 5,143,031 - CA265_RS20850 0.51 -4.5 5,143,059 - CA265_RS20850 0.53 -1.7 5,143,086 - CA265_RS20850 0.56 -2.5 5,143,089 - CA265_RS20850 0.56 -5.2 5,143,119 - CA265_RS20850 0.58 -2.5 5,143,173 - CA265_RS20850 0.63 -2.5 5,143,291 - CA265_RS20850 0.72 -2.4 5,143,316 + CA265_RS20850 0.74 -5.1 5,143,316 + CA265_RS20850 0.74 -4.9 5,143,317 - CA265_RS20850 0.74 -3.3 5,143,323 - CA265_RS20850 0.75 -1.4 5,143,331 + CA265_RS20850 0.75 -4.4 5,143,334 - CA265_RS20850 0.75 -2.8 5,143,334 - CA265_RS20850 0.75 -0.8 5,143,427 + CA265_RS20850 0.83 -3.1 5,143,428 - CA265_RS20850 0.83 -0.3 5,143,428 - CA265_RS20850 0.83 -2.4 5,143,430 - -0.6 5,143,430 - +2.0 5,143,430 - CA265_RS20850 0.83 -1.6 5,143,438 + CA265_RS20850 0.84 -3.6 5,143,438 + CA265_RS20850 0.84 -2.3 5,143,439 - CA265_RS20850 0.84 -2.9 5,143,443 - CA265_RS20850 0.84 -2.7 5,143,483 + CA265_RS20850 0.87 -2.9 5,143,522 + -2.5 5,143,523 - -4.3 5,143,586 - -2.3 5,143,589 + -2.4 5,143,589 + -1.7 5,143,590 - -3.8 5,143,590 - -4.5 5,143,624 - -2.4 5,143,624 - -3.9 5,143,624 - +0.4 5,143,630 + -1.5 5,143,630 + -3.4 5,143,687 - -0.7 5,143,694 - -2.6 5,143,713 + -3.8 5,143,773 + -3.7 5,143,825 + CA265_RS20855 0.13 -3.8 5,143,877 + CA265_RS20855 0.17 -3.5 5,143,904 + CA265_RS20855 0.20 -1.2 5,144,011 + CA265_RS20855 0.30 -3.4 5,144,011 + CA265_RS20855 0.30 -2.9 5,144,012 - CA265_RS20855 0.30 -3.4 5,144,031 - CA265_RS20855 0.32 -1.5 5,144,123 - CA265_RS20855 0.40 -1.9 5,144,179 + CA265_RS20855 0.45 -3.2 5,144,242 - CA265_RS20855 0.51 -1.5 5,144,242 - CA265_RS20855 0.51 -1.2 5,144,242 - CA265_RS20855 0.51 -2.1 5,144,242 - CA265_RS20855 0.51 -3.8 5,144,378 + CA265_RS20855 0.64 -1.6 5,144,505 + CA265_RS20855 0.76 -0.6 5,144,509 + CA265_RS20855 0.76 -2.5 5,144,510 - CA265_RS20855 0.76 -3.5
Or see this region's nucleotide sequence