Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS20850

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS20845 and CA265_RS20850 are separated by 176 nucleotidesCA265_RS20850 and CA265_RS20855 are separated by 48 nucleotides CA265_RS20845: CA265_RS20845 - MBL fold hydrolase, at 5,140,833 to 5,142,215 _RS20845 CA265_RS20850: CA265_RS20850 - glutamate-5-semialdehyde dehydrogenase, at 5,142,392 to 5,143,639 _RS20850 CA265_RS20855: CA265_RS20855 - glutamate 5-kinase (EC 2.7.2.11) (from data), at 5,143,688 to 5,144,767 _RS20855 Position (kb) 5142 5143 5144Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5141.403 kb on + strand, within CA265_RS20845at 5141.445 kb on + strand, within CA265_RS20845at 5141.454 kb on - strand, within CA265_RS20845at 5141.501 kb on - strand, within CA265_RS20845at 5141.632 kb on + strand, within CA265_RS20845at 5141.636 kb on - strand, within CA265_RS20845at 5141.657 kb on - strand, within CA265_RS20845at 5141.713 kb on + strand, within CA265_RS20845at 5141.778 kb on + strand, within CA265_RS20845at 5141.778 kb on + strand, within CA265_RS20845at 5141.802 kb on - strand, within CA265_RS20845at 5141.835 kb on - strand, within CA265_RS20845at 5141.837 kb on + strand, within CA265_RS20845at 5141.904 kb on + strand, within CA265_RS20845at 5141.913 kb on - strand, within CA265_RS20845at 5141.957 kb on + strand, within CA265_RS20845at 5141.958 kb on - strand, within CA265_RS20845at 5141.958 kb on - strand, within CA265_RS20845at 5141.958 kb on - strand, within CA265_RS20845at 5141.958 kb on - strand, within CA265_RS20845at 5141.962 kb on + strand, within CA265_RS20845at 5141.963 kb on - strand, within CA265_RS20845at 5142.013 kb on - strand, within CA265_RS20845at 5142.022 kb on + strand, within CA265_RS20845at 5142.023 kb on - strand, within CA265_RS20845at 5142.041 kb on + strand, within CA265_RS20845at 5142.042 kb on - strand, within CA265_RS20845at 5142.098 kb on + strandat 5142.128 kb on + strandat 5142.158 kb on - strandat 5142.174 kb on - strandat 5142.178 kb on + strandat 5142.178 kb on + strandat 5142.179 kb on - strandat 5142.179 kb on - strandat 5142.213 kb on + strandat 5142.213 kb on + strandat 5142.214 kb on - strandat 5142.257 kb on + strandat 5142.257 kb on + strandat 5142.298 kb on - strandat 5142.336 kb on - strandat 5142.379 kb on - strandat 5142.430 kb on + strandat 5142.431 kb on - strandat 5142.485 kb on - strandat 5142.487 kb on + strandat 5142.487 kb on + strandat 5142.487 kb on + strandat 5142.488 kb on - strandat 5142.529 kb on + strand, within CA265_RS20850at 5142.553 kb on - strand, within CA265_RS20850at 5142.570 kb on - strand, within CA265_RS20850at 5142.579 kb on - strand, within CA265_RS20850at 5142.631 kb on + strand, within CA265_RS20850at 5142.637 kb on + strand, within CA265_RS20850at 5142.638 kb on - strand, within CA265_RS20850at 5142.638 kb on - strand, within CA265_RS20850at 5142.715 kb on + strand, within CA265_RS20850at 5142.806 kb on + strand, within CA265_RS20850at 5142.899 kb on + strand, within CA265_RS20850at 5142.899 kb on + strand, within CA265_RS20850at 5142.900 kb on - strand, within CA265_RS20850at 5142.925 kb on + strand, within CA265_RS20850at 5142.966 kb on + strand, within CA265_RS20850at 5142.966 kb on + strand, within CA265_RS20850at 5142.967 kb on - strand, within CA265_RS20850at 5142.970 kb on + strand, within CA265_RS20850at 5143.027 kb on - strand, within CA265_RS20850at 5143.031 kb on - strand, within CA265_RS20850at 5143.059 kb on - strand, within CA265_RS20850at 5143.086 kb on - strand, within CA265_RS20850at 5143.089 kb on - strand, within CA265_RS20850at 5143.119 kb on - strand, within CA265_RS20850at 5143.173 kb on - strand, within CA265_RS20850at 5143.291 kb on - strand, within CA265_RS20850at 5143.316 kb on + strand, within CA265_RS20850at 5143.316 kb on + strand, within CA265_RS20850at 5143.317 kb on - strand, within CA265_RS20850at 5143.323 kb on - strand, within CA265_RS20850at 5143.331 kb on + strand, within CA265_RS20850at 5143.334 kb on - strand, within CA265_RS20850at 5143.334 kb on - strand, within CA265_RS20850at 5143.427 kb on + strand, within CA265_RS20850at 5143.428 kb on - strand, within CA265_RS20850at 5143.428 kb on - strand, within CA265_RS20850at 5143.430 kb on - strandat 5143.430 kb on - strandat 5143.430 kb on - strand, within CA265_RS20850at 5143.438 kb on + strand, within CA265_RS20850at 5143.438 kb on + strand, within CA265_RS20850at 5143.439 kb on - strand, within CA265_RS20850at 5143.443 kb on - strand, within CA265_RS20850at 5143.483 kb on + strand, within CA265_RS20850at 5143.522 kb on + strandat 5143.523 kb on - strandat 5143.586 kb on - strandat 5143.589 kb on + strandat 5143.589 kb on + strandat 5143.590 kb on - strandat 5143.590 kb on - strandat 5143.624 kb on - strandat 5143.624 kb on - strandat 5143.624 kb on - strandat 5143.630 kb on + strandat 5143.630 kb on + strandat 5143.687 kb on - strandat 5143.694 kb on - strandat 5143.713 kb on + strandat 5143.773 kb on + strandat 5143.825 kb on + strand, within CA265_RS20855at 5143.877 kb on + strand, within CA265_RS20855at 5143.904 kb on + strand, within CA265_RS20855at 5144.011 kb on + strand, within CA265_RS20855at 5144.011 kb on + strand, within CA265_RS20855at 5144.012 kb on - strand, within CA265_RS20855at 5144.031 kb on - strand, within CA265_RS20855at 5144.123 kb on - strand, within CA265_RS20855at 5144.179 kb on + strand, within CA265_RS20855at 5144.242 kb on - strand, within CA265_RS20855at 5144.242 kb on - strand, within CA265_RS20855at 5144.242 kb on - strand, within CA265_RS20855at 5144.242 kb on - strand, within CA265_RS20855at 5144.378 kb on + strand, within CA265_RS20855at 5144.505 kb on + strand, within CA265_RS20855at 5144.509 kb on + strand, within CA265_RS20855at 5144.510 kb on - strand, within CA265_RS20855

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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5,141,403 + CA265_RS20845 0.41 +0.2
5,141,445 + CA265_RS20845 0.44 +1.1
5,141,454 - CA265_RS20845 0.45 -1.7
5,141,501 - CA265_RS20845 0.48 +0.2
5,141,632 + CA265_RS20845 0.58 +0.1
5,141,636 - CA265_RS20845 0.58 +0.6
5,141,657 - CA265_RS20845 0.60 -0.2
5,141,713 + CA265_RS20845 0.64 +0.2
5,141,778 + CA265_RS20845 0.68 +0.1
5,141,778 + CA265_RS20845 0.68 -1.3
5,141,802 - CA265_RS20845 0.70 +0.8
5,141,835 - CA265_RS20845 0.72 -0.7
5,141,837 + CA265_RS20845 0.73 +0.1
5,141,904 + CA265_RS20845 0.77 -0.0
5,141,913 - CA265_RS20845 0.78 +0.4
5,141,957 + CA265_RS20845 0.81 -0.1
5,141,958 - CA265_RS20845 0.81 -1.6
5,141,958 - CA265_RS20845 0.81 +0.5
5,141,958 - CA265_RS20845 0.81 -1.9
5,141,958 - CA265_RS20845 0.81 +1.2
5,141,962 + CA265_RS20845 0.82 -1.2
5,141,963 - CA265_RS20845 0.82 -1.6
5,142,013 - CA265_RS20845 0.85 +0.2
5,142,022 + CA265_RS20845 0.86 -1.8
5,142,023 - CA265_RS20845 0.86 +0.0
5,142,041 + CA265_RS20845 0.87 +0.7
5,142,042 - CA265_RS20845 0.87 +0.4
5,142,098 + -0.1
5,142,128 + -0.2
5,142,158 - -0.8
5,142,174 - +0.2
5,142,178 + -2.3
5,142,178 + -0.5
5,142,179 - +0.9
5,142,179 - -0.0
5,142,213 + +0.3
5,142,213 + +0.1
5,142,214 - +0.2
5,142,257 + +0.0
5,142,257 + -0.8
5,142,298 - +0.2
5,142,336 - +0.1
5,142,379 - -0.9
5,142,430 + -2.8
5,142,431 - -3.4
5,142,485 - -2.4
5,142,487 + -5.5
5,142,487 + -3.4
5,142,487 + -2.1
5,142,488 - -2.6
5,142,529 + CA265_RS20850 0.11 -3.4
5,142,553 - CA265_RS20850 0.13 -4.6
5,142,570 - CA265_RS20850 0.14 -1.2
5,142,579 - CA265_RS20850 0.15 -1.9
5,142,631 + CA265_RS20850 0.19 -3.4
5,142,637 + CA265_RS20850 0.20 -2.2
5,142,638 - CA265_RS20850 0.20 -1.6
5,142,638 - CA265_RS20850 0.20 -3.9
5,142,715 + CA265_RS20850 0.26 -3.4
5,142,806 + CA265_RS20850 0.33 -3.1
5,142,899 + CA265_RS20850 0.41 -5.4
5,142,899 + CA265_RS20850 0.41 -2.3
5,142,900 - CA265_RS20850 0.41 -2.9
5,142,925 + CA265_RS20850 0.43 -3.2
5,142,966 + CA265_RS20850 0.46 -2.9
5,142,966 + CA265_RS20850 0.46 -0.0
5,142,967 - CA265_RS20850 0.46 -3.7
5,142,970 + CA265_RS20850 0.46 -2.8
5,143,027 - CA265_RS20850 0.51 -1.9
5,143,031 - CA265_RS20850 0.51 -4.5
5,143,059 - CA265_RS20850 0.53 -1.7
5,143,086 - CA265_RS20850 0.56 -2.5
5,143,089 - CA265_RS20850 0.56 -5.2
5,143,119 - CA265_RS20850 0.58 -2.5
5,143,173 - CA265_RS20850 0.63 -2.5
5,143,291 - CA265_RS20850 0.72 -2.4
5,143,316 + CA265_RS20850 0.74 -5.1
5,143,316 + CA265_RS20850 0.74 -4.9
5,143,317 - CA265_RS20850 0.74 -3.3
5,143,323 - CA265_RS20850 0.75 -1.4
5,143,331 + CA265_RS20850 0.75 -4.4
5,143,334 - CA265_RS20850 0.75 -2.8
5,143,334 - CA265_RS20850 0.75 -0.8
5,143,427 + CA265_RS20850 0.83 -3.1
5,143,428 - CA265_RS20850 0.83 -0.3
5,143,428 - CA265_RS20850 0.83 -2.4
5,143,430 - -0.6
5,143,430 - +2.0
5,143,430 - CA265_RS20850 0.83 -1.6
5,143,438 + CA265_RS20850 0.84 -3.6
5,143,438 + CA265_RS20850 0.84 -2.3
5,143,439 - CA265_RS20850 0.84 -2.9
5,143,443 - CA265_RS20850 0.84 -2.7
5,143,483 + CA265_RS20850 0.87 -2.9
5,143,522 + -2.5
5,143,523 - -4.3
5,143,586 - -2.3
5,143,589 + -2.4
5,143,589 + -1.7
5,143,590 - -3.8
5,143,590 - -4.5
5,143,624 - -2.4
5,143,624 - -3.9
5,143,624 - +0.4
5,143,630 + -1.5
5,143,630 + -3.4
5,143,687 - -0.7
5,143,694 - -2.6
5,143,713 + -3.8
5,143,773 + -3.7
5,143,825 + CA265_RS20855 0.13 -3.8
5,143,877 + CA265_RS20855 0.17 -3.5
5,143,904 + CA265_RS20855 0.20 -1.2
5,144,011 + CA265_RS20855 0.30 -3.4
5,144,011 + CA265_RS20855 0.30 -2.9
5,144,012 - CA265_RS20855 0.30 -3.4
5,144,031 - CA265_RS20855 0.32 -1.5
5,144,123 - CA265_RS20855 0.40 -1.9
5,144,179 + CA265_RS20855 0.45 -3.2
5,144,242 - CA265_RS20855 0.51 -1.5
5,144,242 - CA265_RS20855 0.51 -1.2
5,144,242 - CA265_RS20855 0.51 -2.1
5,144,242 - CA265_RS20855 0.51 -3.8
5,144,378 + CA265_RS20855 0.64 -1.6
5,144,505 + CA265_RS20855 0.76 -0.6
5,144,509 + CA265_RS20855 0.76 -2.5
5,144,510 - CA265_RS20855 0.76 -3.5

Or see this region's nucleotide sequence