Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20740 and CA265_RS20745 are separated by 3 nucleotides CA265_RS20745 and CA265_RS20750 are separated by 163 nucleotides CA265_RS20750 and CA265_RS20755 are separated by 2 nucleotides
CA265_RS20740: CA265_RS20740 - plasmid transfer protein, at 5,124,912 to 5,126,054
_RS20740
CA265_RS20745: CA265_RS20745 - conjugative transposon protein TraK, at 5,126,058 to 5,126,675
_RS20745
CA265_RS20750: CA265_RS20750 - hypothetical protein, at 5,126,839 to 5,127,066
_RS20750
CA265_RS20755: CA265_RS20755 - hypothetical protein, at 5,127,069 to 5,128,277
_RS20755
Position (kb) 5126
5127 Strain fitness (log2 ratio) -1
0
1
2
3 at 5125.069 kb on + strand, within CA265_RS20740 at 5125.070 kb on - strand, within CA265_RS20740 at 5125.229 kb on - strand, within CA265_RS20740 at 5125.274 kb on - strand, within CA265_RS20740 at 5125.591 kb on - strand, within CA265_RS20740 at 5125.594 kb on + strand, within CA265_RS20740 at 5125.597 kb on + strand, within CA265_RS20740 at 5125.598 kb on - strand, within CA265_RS20740 at 5125.601 kb on + strand, within CA265_RS20740 at 5125.639 kb on + strand, within CA265_RS20740 at 5125.639 kb on + strand, within CA265_RS20740 at 5125.665 kb on - strand, within CA265_RS20740 at 5125.695 kb on - strand, within CA265_RS20740 at 5125.695 kb on - strand, within CA265_RS20740 at 5125.743 kb on + strand, within CA265_RS20740 at 5125.755 kb on + strand, within CA265_RS20740 at 5125.756 kb on - strand, within CA265_RS20740 at 5125.756 kb on - strand, within CA265_RS20740 at 5125.780 kb on - strand, within CA265_RS20740 at 5125.866 kb on - strand, within CA265_RS20740 at 5125.873 kb on + strand, within CA265_RS20740 at 5126.052 kb on + strand at 5126.052 kb on + strand at 5126.052 kb on + strand at 5126.052 kb on + strand at 5126.170 kb on + strand, within CA265_RS20745 at 5126.193 kb on + strand, within CA265_RS20745 at 5126.194 kb on - strand, within CA265_RS20745 at 5126.265 kb on + strand, within CA265_RS20745 at 5126.309 kb on + strand, within CA265_RS20745 at 5126.500 kb on - strand, within CA265_RS20745 at 5126.516 kb on - strand, within CA265_RS20745 at 5126.783 kb on + strand at 5126.783 kb on + strand at 5126.786 kb on - strand at 5126.786 kb on - strand at 5126.833 kb on - strand at 5126.833 kb on - strand at 5126.873 kb on + strand, within CA265_RS20750 at 5126.916 kb on - strand, within CA265_RS20750 at 5127.029 kb on + strand, within CA265_RS20750 at 5127.030 kb on - strand, within CA265_RS20750 at 5127.076 kb on + strand at 5127.096 kb on + strand at 5127.096 kb on + strand at 5127.097 kb on - strand at 5127.097 kb on - strand at 5127.097 kb on - strand at 5127.100 kb on + strand at 5127.113 kb on - strand at 5127.125 kb on + strand at 5127.126 kb on - strand at 5127.147 kb on + strand at 5127.149 kb on + strand at 5127.149 kb on + strand at 5127.247 kb on + strand, within CA265_RS20755 at 5127.358 kb on - strand, within CA265_RS20755 at 5127.377 kb on + strand, within CA265_RS20755 at 5127.378 kb on - strand, within CA265_RS20755 at 5127.599 kb on - strand, within CA265_RS20755 at 5127.623 kb on - strand, within CA265_RS20755
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 5,125,069 + CA265_RS20740 0.14 -1.3 5,125,070 - CA265_RS20740 0.14 +0.3 5,125,229 - CA265_RS20740 0.28 +0.4 5,125,274 - CA265_RS20740 0.32 +0.3 5,125,591 - CA265_RS20740 0.59 -0.2 5,125,594 + CA265_RS20740 0.60 -0.0 5,125,597 + CA265_RS20740 0.60 +0.4 5,125,598 - CA265_RS20740 0.60 +0.2 5,125,601 + CA265_RS20740 0.60 -0.8 5,125,639 + CA265_RS20740 0.64 +1.0 5,125,639 + CA265_RS20740 0.64 +0.3 5,125,665 - CA265_RS20740 0.66 +0.9 5,125,695 - CA265_RS20740 0.69 +0.8 5,125,695 - CA265_RS20740 0.69 +0.2 5,125,743 + CA265_RS20740 0.73 -0.9 5,125,755 + CA265_RS20740 0.74 -0.7 5,125,756 - CA265_RS20740 0.74 -0.7 5,125,756 - CA265_RS20740 0.74 +2.0 5,125,780 - CA265_RS20740 0.76 -0.7 5,125,866 - CA265_RS20740 0.83 +0.7 5,125,873 + CA265_RS20740 0.84 +0.5 5,126,052 + +0.5 5,126,052 + +1.0 5,126,052 + +0.3 5,126,052 + -1.2 5,126,170 + CA265_RS20745 0.18 +0.7 5,126,193 + CA265_RS20745 0.22 +0.5 5,126,194 - CA265_RS20745 0.22 +0.4 5,126,265 + CA265_RS20745 0.33 -0.2 5,126,309 + CA265_RS20745 0.41 +0.6 5,126,500 - CA265_RS20745 0.72 +0.4 5,126,516 - CA265_RS20745 0.74 +0.4 5,126,783 + -1.2 5,126,783 + -0.3 5,126,786 - +0.8 5,126,786 - +0.9 5,126,833 - -0.4 5,126,833 - +0.6 5,126,873 + CA265_RS20750 0.15 +0.1 5,126,916 - CA265_RS20750 0.34 -0.8 5,127,029 + CA265_RS20750 0.83 +1.0 5,127,030 - CA265_RS20750 0.84 -0.4 5,127,076 + -1.6 5,127,096 + -0.4 5,127,096 + +3.0 5,127,097 - +0.1 5,127,097 - +0.0 5,127,097 - +0.2 5,127,100 + -1.3 5,127,113 - +0.5 5,127,125 + +0.1 5,127,126 - +0.8 5,127,147 + +0.1 5,127,149 + -0.5 5,127,149 + +0.1 5,127,247 + CA265_RS20755 0.15 +0.3 5,127,358 - CA265_RS20755 0.24 +0.1 5,127,377 + CA265_RS20755 0.25 +0.8 5,127,378 - CA265_RS20755 0.26 -0.9 5,127,599 - CA265_RS20755 0.44 -0.6 5,127,623 - CA265_RS20755 0.46 -0.3
Or see this region's nucleotide sequence