Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19530 and CA265_RS19535 are separated by 29 nucleotides CA265_RS19535 and CA265_RS19540 are separated by 246 nucleotides CA265_RS19540 and CA265_RS19545 are separated by 222 nucleotides
CA265_RS19530: CA265_RS19530 - asparaginase, at 4,842,449 to 4,843,291
_RS19530
CA265_RS19535: CA265_RS19535 - hypothetical protein, at 4,843,321 to 4,844,010
_RS19535
CA265_RS19540: CA265_RS19540 - tail-specific protease, at 4,844,257 to 4,846,446
_RS19540
CA265_RS19545: CA265_RS19545 - protease, at 4,846,669 to 4,847,610
_RS19545
Position (kb) 4844
4845
4846
4847 Strain fitness (log2 ratio) -1
0
1
2 at 4843.271 kb on - strand at 4843.282 kb on - strand at 4843.302 kb on - strand at 4843.364 kb on + strand at 4843.364 kb on + strand at 4843.371 kb on - strand at 4843.389 kb on + strand at 4843.410 kb on + strand, within CA265_RS19535 at 4843.424 kb on + strand, within CA265_RS19535 at 4843.425 kb on - strand, within CA265_RS19535 at 4843.429 kb on - strand, within CA265_RS19535 at 4843.429 kb on - strand, within CA265_RS19535 at 4843.527 kb on - strand, within CA265_RS19535 at 4843.552 kb on - strand, within CA265_RS19535 at 4843.700 kb on + strand, within CA265_RS19535 at 4843.711 kb on + strand, within CA265_RS19535 at 4843.711 kb on + strand, within CA265_RS19535 at 4843.714 kb on - strand, within CA265_RS19535 at 4843.714 kb on - strand, within CA265_RS19535 at 4843.744 kb on - strand, within CA265_RS19535 at 4843.750 kb on + strand, within CA265_RS19535 at 4843.786 kb on - strand, within CA265_RS19535 at 4843.802 kb on + strand, within CA265_RS19535 at 4843.835 kb on + strand, within CA265_RS19535 at 4843.936 kb on + strand, within CA265_RS19535 at 4843.936 kb on + strand, within CA265_RS19535 at 4843.937 kb on - strand, within CA265_RS19535 at 4843.937 kb on - strand, within CA265_RS19535 at 4844.042 kb on - strand at 4844.056 kb on - strand at 4844.056 kb on - strand at 4844.058 kb on - strand at 4844.131 kb on + strand at 4844.131 kb on + strand at 4844.143 kb on - strand at 4844.195 kb on - strand at 4844.195 kb on - strand at 4844.235 kb on + strand at 4844.245 kb on - strand at 4844.246 kb on + strand at 4844.246 kb on + strand at 4844.371 kb on - strand at 4844.440 kb on - strand at 4844.490 kb on + strand, within CA265_RS19540 at 4844.494 kb on + strand, within CA265_RS19540 at 4844.495 kb on - strand, within CA265_RS19540 at 4844.497 kb on - strand, within CA265_RS19540 at 4844.566 kb on + strand, within CA265_RS19540 at 4844.566 kb on + strand, within CA265_RS19540 at 4844.566 kb on + strand, within CA265_RS19540 at 4844.567 kb on - strand, within CA265_RS19540 at 4844.568 kb on + strand, within CA265_RS19540 at 4844.568 kb on + strand, within CA265_RS19540 at 4844.569 kb on - strand, within CA265_RS19540 at 4844.574 kb on - strand, within CA265_RS19540 at 4844.574 kb on - strand, within CA265_RS19540 at 4844.601 kb on - strand, within CA265_RS19540 at 4844.601 kb on - strand, within CA265_RS19540 at 4844.622 kb on + strand, within CA265_RS19540 at 4844.630 kb on - strand, within CA265_RS19540 at 4844.660 kb on - strand, within CA265_RS19540 at 4844.660 kb on - strand, within CA265_RS19540 at 4844.710 kb on + strand, within CA265_RS19540 at 4844.710 kb on + strand, within CA265_RS19540 at 4844.710 kb on + strand, within CA265_RS19540 at 4844.785 kb on - strand, within CA265_RS19540 at 4844.789 kb on - strand, within CA265_RS19540 at 4844.850 kb on + strand, within CA265_RS19540 at 4844.949 kb on + strand, within CA265_RS19540 at 4844.950 kb on - strand, within CA265_RS19540 at 4844.950 kb on - strand, within CA265_RS19540 at 4844.994 kb on + strand, within CA265_RS19540 at 4844.994 kb on + strand, within CA265_RS19540 at 4844.995 kb on - strand, within CA265_RS19540 at 4845.035 kb on + strand, within CA265_RS19540 at 4845.036 kb on - strand, within CA265_RS19540 at 4845.088 kb on - strand, within CA265_RS19540 at 4845.101 kb on + strand, within CA265_RS19540 at 4845.102 kb on - strand, within CA265_RS19540 at 4845.102 kb on - strand, within CA265_RS19540 at 4845.120 kb on + strand, within CA265_RS19540 at 4845.120 kb on + strand, within CA265_RS19540 at 4845.152 kb on + strand, within CA265_RS19540 at 4845.153 kb on - strand, within CA265_RS19540 at 4845.185 kb on + strand, within CA265_RS19540 at 4845.185 kb on + strand, within CA265_RS19540 at 4845.186 kb on - strand, within CA265_RS19540 at 4845.278 kb on + strand, within CA265_RS19540 at 4845.279 kb on - strand, within CA265_RS19540 at 4845.348 kb on + strand, within CA265_RS19540 at 4845.369 kb on + strand, within CA265_RS19540 at 4845.388 kb on + strand, within CA265_RS19540 at 4845.388 kb on + strand, within CA265_RS19540 at 4845.389 kb on - strand, within CA265_RS19540 at 4845.389 kb on - strand, within CA265_RS19540 at 4845.488 kb on + strand, within CA265_RS19540 at 4845.501 kb on - strand, within CA265_RS19540 at 4845.571 kb on - strand, within CA265_RS19540 at 4845.642 kb on - strand, within CA265_RS19540 at 4845.671 kb on + strand, within CA265_RS19540 at 4845.717 kb on - strand, within CA265_RS19540 at 4845.735 kb on + strand, within CA265_RS19540 at 4845.738 kb on + strand, within CA265_RS19540 at 4845.738 kb on + strand, within CA265_RS19540 at 4845.763 kb on - strand, within CA265_RS19540 at 4845.836 kb on + strand, within CA265_RS19540 at 4845.844 kb on - strand, within CA265_RS19540 at 4845.861 kb on + strand at 4845.862 kb on - strand, within CA265_RS19540 at 4846.009 kb on - strand, within CA265_RS19540 at 4846.214 kb on + strand, within CA265_RS19540 at 4846.408 kb on + strand at 4846.409 kb on - strand at 4846.409 kb on - strand at 4846.444 kb on + strand at 4846.455 kb on - strand at 4846.632 kb on + strand at 4846.632 kb on + strand at 4846.705 kb on + strand at 4846.828 kb on + strand, within CA265_RS19545 at 4846.878 kb on + strand, within CA265_RS19545 at 4846.977 kb on + strand, within CA265_RS19545 at 4846.978 kb on - strand, within CA265_RS19545 at 4847.010 kb on + strand, within CA265_RS19545 at 4847.086 kb on - strand, within CA265_RS19545 at 4847.103 kb on + strand, within CA265_RS19545 at 4847.103 kb on + strand, within CA265_RS19545 at 4847.106 kb on + strand, within CA265_RS19545 at 4847.234 kb on + strand, within CA265_RS19545 at 4847.234 kb on + strand, within CA265_RS19545 at 4847.234 kb on + strand, within CA265_RS19545 at 4847.235 kb on - strand, within CA265_RS19545 at 4847.278 kb on + strand, within CA265_RS19545 at 4847.293 kb on + strand, within CA265_RS19545 at 4847.293 kb on + strand, within CA265_RS19545 at 4847.301 kb on + strand, within CA265_RS19545 at 4847.348 kb on + strand, within CA265_RS19545 at 4847.349 kb on - strand, within CA265_RS19545 at 4847.354 kb on - strand, within CA265_RS19545 at 4847.369 kb on + strand, within CA265_RS19545
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 4,843,271 - -0.9 4,843,282 - -0.8 4,843,302 - +0.0 4,843,364 + +0.4 4,843,364 + -1.0 4,843,371 - -0.6 4,843,389 + +0.3 4,843,410 + CA265_RS19535 0.13 +0.2 4,843,424 + CA265_RS19535 0.15 +0.0 4,843,425 - CA265_RS19535 0.15 -0.2 4,843,429 - CA265_RS19535 0.16 -0.2 4,843,429 - CA265_RS19535 0.16 -0.2 4,843,527 - CA265_RS19535 0.30 -0.2 4,843,552 - CA265_RS19535 0.33 +0.1 4,843,700 + CA265_RS19535 0.55 +0.1 4,843,711 + CA265_RS19535 0.57 -0.9 4,843,711 + CA265_RS19535 0.57 +1.0 4,843,714 - CA265_RS19535 0.57 -1.3 4,843,714 - CA265_RS19535 0.57 -0.0 4,843,744 - CA265_RS19535 0.61 +0.4 4,843,750 + CA265_RS19535 0.62 +0.3 4,843,786 - CA265_RS19535 0.67 -0.5 4,843,802 + CA265_RS19535 0.70 -0.4 4,843,835 + CA265_RS19535 0.74 +0.5 4,843,936 + CA265_RS19535 0.89 +0.2 4,843,936 + CA265_RS19535 0.89 -0.5 4,843,937 - CA265_RS19535 0.89 +0.1 4,843,937 - CA265_RS19535 0.89 +0.5 4,844,042 - -0.2 4,844,056 - -0.3 4,844,056 - +0.0 4,844,058 - -1.0 4,844,131 + -1.2 4,844,131 + -1.6 4,844,143 - -0.9 4,844,195 - +0.1 4,844,195 - +2.4 4,844,235 + -0.4 4,844,245 - +0.5 4,844,246 + -1.1 4,844,246 + +1.0 4,844,371 - +0.6 4,844,440 - -0.2 4,844,490 + CA265_RS19540 0.11 +0.6 4,844,494 + CA265_RS19540 0.11 +1.6 4,844,495 - CA265_RS19540 0.11 +0.6 4,844,497 - CA265_RS19540 0.11 +0.8 4,844,566 + CA265_RS19540 0.14 +1.0 4,844,566 + CA265_RS19540 0.14 +0.5 4,844,566 + CA265_RS19540 0.14 +1.1 4,844,567 - CA265_RS19540 0.14 +1.6 4,844,568 + CA265_RS19540 0.14 +1.2 4,844,568 + CA265_RS19540 0.14 +0.4 4,844,569 - CA265_RS19540 0.14 +0.9 4,844,574 - CA265_RS19540 0.14 +0.4 4,844,574 - CA265_RS19540 0.14 +0.8 4,844,601 - CA265_RS19540 0.16 -1.4 4,844,601 - CA265_RS19540 0.16 +0.3 4,844,622 + CA265_RS19540 0.17 +1.7 4,844,630 - CA265_RS19540 0.17 +1.3 4,844,660 - CA265_RS19540 0.18 +1.7 4,844,660 - CA265_RS19540 0.18 +0.6 4,844,710 + CA265_RS19540 0.21 +0.4 4,844,710 + CA265_RS19540 0.21 -1.0 4,844,710 + CA265_RS19540 0.21 -0.3 4,844,785 - CA265_RS19540 0.24 +1.5 4,844,789 - CA265_RS19540 0.24 +0.2 4,844,850 + CA265_RS19540 0.27 -0.0 4,844,949 + CA265_RS19540 0.32 -0.0 4,844,950 - CA265_RS19540 0.32 +0.5 4,844,950 - CA265_RS19540 0.32 -1.3 4,844,994 + CA265_RS19540 0.34 -0.9 4,844,994 + CA265_RS19540 0.34 -0.5 4,844,995 - CA265_RS19540 0.34 +0.7 4,845,035 + CA265_RS19540 0.36 -0.6 4,845,036 - CA265_RS19540 0.36 +0.6 4,845,088 - CA265_RS19540 0.38 +0.3 4,845,101 + CA265_RS19540 0.39 +0.3 4,845,102 - CA265_RS19540 0.39 +0.2 4,845,102 - CA265_RS19540 0.39 +0.5 4,845,120 + CA265_RS19540 0.39 +0.2 4,845,120 + CA265_RS19540 0.39 -1.0 4,845,152 + CA265_RS19540 0.41 +0.6 4,845,153 - CA265_RS19540 0.41 +0.9 4,845,185 + CA265_RS19540 0.42 +2.4 4,845,185 + CA265_RS19540 0.42 +0.2 4,845,186 - CA265_RS19540 0.42 +1.0 4,845,278 + CA265_RS19540 0.47 -0.2 4,845,279 - CA265_RS19540 0.47 +1.2 4,845,348 + CA265_RS19540 0.50 -0.3 4,845,369 + CA265_RS19540 0.51 +0.3 4,845,388 + CA265_RS19540 0.52 +1.2 4,845,388 + CA265_RS19540 0.52 +0.4 4,845,389 - CA265_RS19540 0.52 +0.4 4,845,389 - CA265_RS19540 0.52 +1.2 4,845,488 + CA265_RS19540 0.56 +0.4 4,845,501 - CA265_RS19540 0.57 +0.5 4,845,571 - CA265_RS19540 0.60 +0.7 4,845,642 - CA265_RS19540 0.63 +0.7 4,845,671 + CA265_RS19540 0.65 +0.4 4,845,717 - CA265_RS19540 0.67 +1.6 4,845,735 + CA265_RS19540 0.67 +0.4 4,845,738 + CA265_RS19540 0.68 +0.6 4,845,738 + CA265_RS19540 0.68 -0.5 4,845,763 - CA265_RS19540 0.69 +1.3 4,845,836 + CA265_RS19540 0.72 -0.4 4,845,844 - CA265_RS19540 0.72 -0.1 4,845,861 + +2.0 4,845,862 - CA265_RS19540 0.73 +1.1 4,846,009 - CA265_RS19540 0.80 -0.2 4,846,214 + CA265_RS19540 0.89 +0.5 4,846,408 + -0.4 4,846,409 - -0.6 4,846,409 - +0.0 4,846,444 + -0.7 4,846,455 - +0.3 4,846,632 + -1.0 4,846,632 + -0.3 4,846,705 + -1.3 4,846,828 + CA265_RS19545 0.17 +0.8 4,846,878 + CA265_RS19545 0.22 +0.9 4,846,977 + CA265_RS19545 0.33 +0.3 4,846,978 - CA265_RS19545 0.33 +0.2 4,847,010 + CA265_RS19545 0.36 -0.4 4,847,086 - CA265_RS19545 0.44 -0.2 4,847,103 + CA265_RS19545 0.46 +0.8 4,847,103 + CA265_RS19545 0.46 -0.2 4,847,106 + CA265_RS19545 0.46 +0.3 4,847,234 + CA265_RS19545 0.60 +0.8 4,847,234 + CA265_RS19545 0.60 -0.9 4,847,234 + CA265_RS19545 0.60 +0.8 4,847,235 - CA265_RS19545 0.60 -0.1 4,847,278 + CA265_RS19545 0.65 -1.0 4,847,293 + CA265_RS19545 0.66 -0.3 4,847,293 + CA265_RS19545 0.66 +0.1 4,847,301 + CA265_RS19545 0.67 +0.4 4,847,348 + CA265_RS19545 0.72 -0.3 4,847,349 - CA265_RS19545 0.72 +2.1 4,847,354 - CA265_RS19545 0.73 +0.4 4,847,369 + CA265_RS19545 0.74 +2.0
Or see this region's nucleotide sequence