Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS18840 and CA265_RS18845 are separated by 2 nucleotides CA265_RS18845 and CA265_RS18850 are separated by 29 nucleotides CA265_RS18850 and CA265_RS18855 overlap by 1 nucleotides CA265_RS18855 and CA265_RS18860 are separated by 337 nucleotides
CA265_RS18840: CA265_RS18840 - transposase, at 4,687,457 to 4,687,897
_RS18840
CA265_RS18845: CA265_RS18845 - GNAT family N-acetyltransferase, at 4,687,900 to 4,688,457
_RS18845
CA265_RS18850: CA265_RS18850 - hypothetical protein, at 4,688,487 to 4,688,687
_RS18850
CA265_RS18855: CA265_RS18855 - hypothetical protein, at 4,688,687 to 4,689,136
_RS18855
CA265_RS18860: CA265_RS18860 - alpha-ketoacid dehydrogenase subunit beta, at 4,689,474 to 4,690,460
_RS18860
Position (kb) 4688
4689 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4687.515 kb on - strand, within CA265_RS18840 at 4687.674 kb on + strand, within CA265_RS18840 at 4687.675 kb on - strand, within CA265_RS18840 at 4687.708 kb on + strand, within CA265_RS18840 at 4687.723 kb on - strand, within CA265_RS18840 at 4687.730 kb on - strand, within CA265_RS18840 at 4687.793 kb on + strand, within CA265_RS18840 at 4687.793 kb on + strand, within CA265_RS18840 at 4687.796 kb on - strand, within CA265_RS18840 at 4687.873 kb on + strand at 4687.873 kb on + strand at 4687.874 kb on - strand at 4688.001 kb on + strand, within CA265_RS18845 at 4688.049 kb on + strand, within CA265_RS18845 at 4688.093 kb on - strand, within CA265_RS18845 at 4688.153 kb on + strand, within CA265_RS18845 at 4688.163 kb on - strand, within CA265_RS18845 at 4688.163 kb on - strand, within CA265_RS18845 at 4688.210 kb on - strand, within CA265_RS18845 at 4688.227 kb on + strand, within CA265_RS18845 at 4688.316 kb on + strand, within CA265_RS18845 at 4688.316 kb on + strand, within CA265_RS18845 at 4688.316 kb on + strand, within CA265_RS18845 at 4688.317 kb on - strand, within CA265_RS18845 at 4688.319 kb on + strand, within CA265_RS18845 at 4688.325 kb on - strand, within CA265_RS18845 at 4688.396 kb on - strand, within CA265_RS18845 at 4688.421 kb on + strand at 4688.422 kb on - strand at 4688.432 kb on - strand at 4688.432 kb on - strand at 4688.438 kb on + strand at 4688.439 kb on - strand at 4688.466 kb on - strand at 4688.541 kb on - strand, within CA265_RS18850 at 4688.557 kb on - strand, within CA265_RS18850 at 4688.679 kb on - strand at 4688.686 kb on - strand at 4688.738 kb on - strand, within CA265_RS18855 at 4688.753 kb on + strand, within CA265_RS18855 at 4688.756 kb on - strand, within CA265_RS18855 at 4688.761 kb on - strand, within CA265_RS18855 at 4688.813 kb on - strand, within CA265_RS18855 at 4688.857 kb on - strand, within CA265_RS18855 at 4688.962 kb on - strand, within CA265_RS18855 at 4689.078 kb on + strand, within CA265_RS18855 at 4689.115 kb on + strand at 4689.133 kb on - strand at 4689.145 kb on - strand at 4689.186 kb on - strand at 4689.202 kb on - strand at 4689.230 kb on + strand at 4689.231 kb on - strand at 4689.259 kb on + strand at 4689.321 kb on + strand at 4689.391 kb on + strand at 4689.391 kb on + strand at 4689.392 kb on - strand at 4689.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 4,687,515 - CA265_RS18840 0.13 +0.0 4,687,674 + CA265_RS18840 0.49 -0.1 4,687,675 - CA265_RS18840 0.49 +0.6 4,687,708 + CA265_RS18840 0.57 +0.0 4,687,723 - CA265_RS18840 0.60 +0.5 4,687,730 - CA265_RS18840 0.62 -1.5 4,687,793 + CA265_RS18840 0.76 -1.2 4,687,793 + CA265_RS18840 0.76 -1.0 4,687,796 - CA265_RS18840 0.77 +0.0 4,687,873 + +0.3 4,687,873 + +0.3 4,687,874 - -0.1 4,688,001 + CA265_RS18845 0.18 +0.0 4,688,049 + CA265_RS18845 0.27 +0.0 4,688,093 - CA265_RS18845 0.35 +0.9 4,688,153 + CA265_RS18845 0.45 +0.9 4,688,163 - CA265_RS18845 0.47 -0.1 4,688,163 - CA265_RS18845 0.47 -0.6 4,688,210 - CA265_RS18845 0.56 -0.7 4,688,227 + CA265_RS18845 0.59 +0.8 4,688,316 + CA265_RS18845 0.75 +0.9 4,688,316 + CA265_RS18845 0.75 -1.3 4,688,316 + CA265_RS18845 0.75 +0.5 4,688,317 - CA265_RS18845 0.75 -0.6 4,688,319 + CA265_RS18845 0.75 +1.9 4,688,325 - CA265_RS18845 0.76 -2.3 4,688,396 - CA265_RS18845 0.89 +0.0 4,688,421 + +0.7 4,688,422 - +4.5 4,688,432 - -0.3 4,688,432 - +1.1 4,688,438 + +0.6 4,688,439 - +0.7 4,688,466 - -0.2 4,688,541 - CA265_RS18850 0.27 -1.0 4,688,557 - CA265_RS18850 0.35 -1.1 4,688,679 - +2.2 4,688,686 - +0.4 4,688,738 - CA265_RS18855 0.11 +0.9 4,688,753 + CA265_RS18855 0.15 +0.2 4,688,756 - CA265_RS18855 0.15 +0.6 4,688,761 - CA265_RS18855 0.16 -0.3 4,688,813 - CA265_RS18855 0.28 +0.5 4,688,857 - CA265_RS18855 0.38 +0.3 4,688,962 - CA265_RS18855 0.61 -0.9 4,689,078 + CA265_RS18855 0.87 +1.3 4,689,115 + -1.2 4,689,133 - +0.9 4,689,145 - -0.0 4,689,186 - -0.3 4,689,202 - +0.0 4,689,230 + +0.0 4,689,231 - -0.2 4,689,259 + +0.4 4,689,321 + +0.5 4,689,391 + -1.9 4,689,391 + -2.5 4,689,392 - -0.2 4,689,414 + -0.0
Or see this region's nucleotide sequence